Carm033754.1
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- topi
- Assembly
- GCA_963971235.1
- Location
- OZ020240.1:17035464-17039570[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.9e-06 0.00042 21.6 0.6 1 22 104 125 104 125 0.95 2 19 6.7e-05 0.0099 17.3 3.2 2 23 160 181 159 181 0.97 3 19 0.00039 0.057 14.9 0.2 2 23 186 207 185 207 0.97 4 19 8.7e-05 0.013 17.0 0.6 3 23 215 235 214 235 0.98 5 19 1.4e-06 0.0002 22.6 0.3 3 23 243 263 241 263 0.97 6 19 0.39 58 5.5 5.2 1 23 272 294 272 294 0.97 7 19 0.073 11 7.8 0.8 2 23 301 321 300 321 0.94 8 19 4.1e-05 0.0061 18.0 2.4 3 23 329 349 328 349 0.98 9 19 8e-05 0.012 17.1 4.0 1 22 355 376 355 380 0.94 10 19 0.0037 0.54 11.9 2.6 1 23 464 486 464 486 0.98 11 19 3.6e-06 0.00053 21.3 0.5 2 23 493 515 493 515 0.96 12 19 1.2e-05 0.0017 19.7 1.2 1 23 521 543 521 543 0.97 13 19 0.066 9.8 7.9 0.4 1 23 547 569 547 569 0.97 14 19 2.3e-05 0.0034 18.8 2.1 3 23 577 597 575 597 0.97 15 19 2e-05 0.0029 19.0 0.1 1 23 603 625 603 625 0.98 16 19 0.091 13 7.5 0.9 1 23 631 653 631 653 0.97 17 19 4.7e-07 7e-05 24.1 0.2 2 23 660 681 659 681 0.97 18 19 7.5e-07 0.00011 23.5 0.6 1 23 687 709 687 709 0.97 19 19 3.4e-07 5e-05 24.6 2.3 1 23 715 737 715 737 0.99
Sequence Information
- Coding Sequence
- ATGAGAATAACGATGACAAGAGTTCTACTAAAGAACGGGAATCTTCGGAACGCACGGAAGTTACGTTGCGCCACGCGTAAGAAGCGATTGGGTCCGATTGGCAATGCGTTTGACGTTAAAGTATCCAAAGTATTCGATTGTATTATAAATGCGGAGGTAAAGGTGGATAAGCGCTTTCGACAAGCGACGAATCACCGTAGCGATTCTTGCGACGAATATTACGAGACGAAGGACTCCTTGTTGTTTCACAGAAGCGAACGAGAAATTCATCGTGAAGAAGGAAACCGACGTGAGACGAGAAACACGAGCTTCGCGTGTCCTTACTGCGGTGAGAAATTCACAAAGAACACATCGTTACTTAGACATCAGCGAAAGCGTTGCAAAGAGTACAAAGAAACATTGAAATTAAATTCTCCTGCTGTCGAGGAAAAGGAGATACTGAAATCCAAAGATGAGAAACGTTGCGCGGCTCCAGTGGAGTGCGACATTTGCcacaagaaattcaagaagaAGCGATACATCAGAGTTCACATGCGACTACACGGGTCGCCGAGCGTTTGCGATATATGCGGAGCAACATTTGCGTCCGATTGGTGTCTCGAACAGCACGTGAGACGCCACAATGCCGATTACTCGGTGTTTTGCAAAGTGTGCAATAAGGGATTTTATTACGCAGCAACTCTGAACCTTCACATGACAACGCACACCAAAGAGAAGACTATTGCTTGCGAAATTTGCAAAAAACCGTTCGCCAATCGTATATATCTTCGTAGTCACATGAGAACTCATTTGGATCCGAAAATGCGACGAAAATACAAATGTGAAATTTGCAATTTCGAGACATTCTACAGCTATTGTTATAAGGAACACAGAGATACGCACACCGGCGATGGACGCTTGGAATGCAAAATATGCGGAAAATTGATTCGCCGACAGTACATGAAAACTCACGTGAGAATGCATAATGGGGATAAACCGGAGATATGCGAATATTGCGGTAAACgatttttgtcgcgaaaataTTTGACTAAACATCGTCGCACCCACACGGGAGAGCGACCGTACAGATGTTTTATGTGCGACAATAGCTTCACGCAACGTTCGAGTCTAACGAAGCATCTCAAGTCGTGCAACGCTCACGAATGCGCATCGGTGGACGAAGAATCGCCGAAATTGGAGCCCATCGATCTCGCCGGAGAGTACGTGATAGgcgacgaggaagacgaagaataCACAGAGGAATATCGTAGCTTCGAGAGTCACGAAATTGTCACGGAAACATTGGAATATACAGTGAGCGTCGAGGATCTCAAAGTCTCAAAGACGAAGGAAGAATGCCGCAAGCGACCGCGCGGTAAGTTCGAGACATCGAGAAAATCGCTGAAGCAATACGTCTGCGATCTGTGCGGCAAAACGATGAGAAAGAAATTTCAATATCTGAAACACCGTCAAAATCACGAGTGGAAAGCGGACGGACGTTGCGACGAGTGCGAAAAGAGTTTCAGCGACGAGGATAAACTTCGAAAGCACATTATCAAAGCTCATCAAGAGGACAAACCGTTTCCCTGTCTTCTGTGCGGCAAATCCTTCAAAACCGAAGAATTTCTCAAAACTCATCTCAAACAACACAACAAAAGATTCACCTGCGATATATGCGGCGTCTCTAAGGTATCGGGTTACGATTTGCGACTACACAAGAAGAAACACAATCAGGAATACGTGACGCATTGCGAAATTTGCAACAAGGGATTCTACACGAATCAAACATTGGAACGTCATTTGCTGACGCACACGGGAGAGAAACCTTTCGTGTGCACAATATGCAATACGCCGTACGCGAGCGCCGCGTATCTTAATATGCATATGAAGTCTCACGGTCAGCGCGAGAAGCACAAGTGCAATATATGCAATTTCGAGAGTTACTGGAAAGCCGCTCTCAAGGTGCACTTGAAGATCCACACCGGTGAGAATCAGATAACCTGCGAGATATGCGGCAAATCCGTATCCAGCAAAACTTATCTACAGATCCACATGAGAATACACTCCGGTGAAAAGCCTCACATTTGCGAAATTTGCGGCAAAGCATTCAGCGTTAGAAAATATCTAATCGTACATCTGAGAACTCACACCGGTGAACGACCCTACGAGTGCAaattatgccaaaaaaaatttactcaacAGGGATCGCTGAATTCGCACATGAAGTCGCATAACGAgggaaaatga
- Protein Sequence
- MRITMTRVLLKNGNLRNARKLRCATRKKRLGPIGNAFDVKVSKVFDCIINAEVKVDKRFRQATNHRSDSCDEYYETKDSLLFHRSEREIHREEGNRRETRNTSFACPYCGEKFTKNTSLLRHQRKRCKEYKETLKLNSPAVEEKEILKSKDEKRCAAPVECDICHKKFKKKRYIRVHMRLHGSPSVCDICGATFASDWCLEQHVRRHNADYSVFCKVCNKGFYYAATLNLHMTTHTKEKTIACEICKKPFANRIYLRSHMRTHLDPKMRRKYKCEICNFETFYSYCYKEHRDTHTGDGRLECKICGKLIRRQYMKTHVRMHNGDKPEICEYCGKRFLSRKYLTKHRRTHTGERPYRCFMCDNSFTQRSSLTKHLKSCNAHECASVDEESPKLEPIDLAGEYVIGDEEDEEYTEEYRSFESHEIVTETLEYTVSVEDLKVSKTKEECRKRPRGKFETSRKSLKQYVCDLCGKTMRKKFQYLKHRQNHEWKADGRCDECEKSFSDEDKLRKHIIKAHQEDKPFPCLLCGKSFKTEEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVTHCEICNKGFYTNQTLERHLLTHTGEKPFVCTICNTPYASAAYLNMHMKSHGQREKHKCNICNFESYWKAALKVHLKIHTGENQITCEICGKSVSSKTYLQIHMRIHSGEKPHICEICGKAFSVRKYLIVHLRTHTGERPYECKLCQKKFTQQGSLNSHMKSHNEGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -