Carm033049.1
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_963971235.1
- Location
- OZ020240.1:6503237-6507535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.011 1.7 10.3 3.4 2 23 330 351 330 351 0.98 2 22 4e-05 0.006 18.0 0.5 1 23 361 383 361 383 0.98 3 22 2.7e-06 0.0004 21.7 1.1 1 23 389 412 389 412 0.95 4 22 0.0018 0.27 12.8 3.1 1 23 418 440 418 440 0.98 5 22 0.00063 0.093 14.3 4.3 1 23 446 468 446 468 0.96 6 22 0.0092 1.4 10.6 5.1 1 23 474 496 474 496 0.96 7 22 0.0008 0.12 13.9 1.4 1 23 502 524 502 524 0.98 8 22 4.8e-05 0.0071 17.8 0.8 2 20 599 617 599 619 0.94 9 22 0.0016 0.24 13.0 0.7 1 23 678 701 678 701 0.93 10 22 0.0015 0.22 13.1 0.9 1 23 734 756 734 756 0.98 11 22 1.8e-05 0.0026 19.1 1.6 1 23 762 785 762 785 0.97 12 22 1.3e-05 0.0019 19.6 0.6 1 23 791 813 791 813 0.98 13 22 4.4e-07 6.5e-05 24.2 0.6 1 23 819 841 819 841 0.98 14 22 0.00037 0.054 15.0 0.3 1 23 847 869 847 869 0.98 15 22 0.00012 0.017 16.6 3.3 1 23 875 897 875 897 0.96 16 22 1.2e-05 0.0018 19.7 0.9 2 23 904 926 903 926 0.96 17 22 3.1e-05 0.0046 18.4 3.0 1 23 946 969 946 969 0.96 18 22 0.13 19 7.0 0.4 1 23 975 997 975 997 0.97 19 22 8.4e-05 0.012 17.0 4.5 1 23 1003 1026 1003 1026 0.95 20 22 1.4e-05 0.002 19.5 0.1 1 23 1033 1055 1033 1055 0.98 21 22 0.00011 0.017 16.6 4.0 1 23 1061 1083 1061 1083 0.97 22 22 0.00061 0.09 14.3 2.4 1 23 1089 1112 1089 1112 0.95
Sequence Information
- Coding Sequence
- ATGTTTAAATTATCGAGGTTAACTCCGTCCCGCAGGACGTCAATCGACGCAATCGTTGCCAATAACGAGGAGTCCAAAAATCCAGAAAACATGGATATTTCCTTGGAAAATTGCGAATACACTGACTCAACGGAACAGAATTTTTTGTTCGAAATATGCAGAGTTTGCGCCAATAAAAACGATCACATTATACCGATATTCGAAGGCGAAGGAGCTGAACACGATTTAAGCAACAAAATTCACAAATATCTTCCGATTCAGATCTCGAAGAACGATACTCTGCCGCTACAGTTGTGCTATCATTGCGCCGCGACGCTGTTGGCTTGGCATGAGTTAATCGAAGGTTGTGAGGATGCGGAGAAAAGGCTTTTGCGGATGGAAAGCAAGCTGAGAGAGAAGGAACAGATGCGATTAAAGGATGCGGAAGTTCCGATTTCTAACGACGTGACCGAACGAATTAACGTCGCGAGCGAAGAGCACATTGACGATCCGGAGCCGATTACGAGTAAAAAAGAGGAACAAATCTGTTTGATGGAAAAAGAGGAAGAGCCCAATGAGTCTGTAGAACATGCTGCGAGTCCAGAAGACAAAGAAAGGTTCGGCAAATCGAAGAAGCCGTTTAAGATATTCCTTGACGCGCAAAATATACAATGTGAGAAGTCGAGAAATGTTAAGAGCGAAGTTAGAGACGAGAAGCGTTCGACGAGAGAGGATACAGAGACGATATGGAGGGATGCGTTGTACGCGACTATCGAGAATCAATTGCCAAATTTGGAGTCACCGATTCGCGTCGACGAGGATCTCGAATGCAGTGTCGAAGAAACGTTCGCAAAGCCCGAAGAAACCGAGCCGATCGCGCCGCTCGATATCGAGAACATGAAGAAAGAAACGTTCGTCTCGCGCGAGGATGATTCGCAAAGATCTTTGCATCCCGAAGAGCGAGAATCCGCGCCGAGCGACGAGTCGAATAACGAGGGGAGTCGAGCGAAATGCAACATCTGTTCGCAACAATTTTCTCACATCAATGATCTTCACGCGCACGCGAGACAACACAAAGATTTGCCGGAAACGCGAAAGATCTACGAATGCGTTGAGTGCGCCAAAAGTTTTCGTCTGAAAGACTCTTTCGTTCGTCATTTGCGAATTCATCGCGACGAGCGTCCGTTCACGTGTCACGTTTGCGGAAAACAATTTCGCGACTCCGGCGGTCTGTCGCGGCATCTCAAGGACGTTCACGCGAAATTAAAGAATTTCTCTTGCGACATTTGCGCAAAATGTTTCTCATCGAAGGCGACCCGCGATGACCATCGACGCACGCATACCGGCGAAAGACCTTACGTTTGCGATACTTGCAACAAATCATTCAAATCCAAAGCGTGTCTCTACAGTCACAACAAACTGCACACGAATGAATTTCCTCATCACTGCGCTTACTGCAACAAGAAATTTCGCCGACGACAAGAAATGCTCGTACACGCGACGACGCACACAGGCGAAAAGAATTACAGTTGCGACGTTTGTTACAAGCGGTTTCGCGTTAAGACCGAAGTAGTTCGACACAAATTGACGCATTCCGATGAGAAACCCTTCGTTTGCGCAAAATCCGGCGTTACGAGAAGTTTCACGACATACGTCGGTAAACGAAGAGAAGCTTCCAATGGCTCGTTGAAAATTGCTATCGTGACGAGACTAAGCGATCGAAGGCAACGCGACGCTGATCTTCGCAACGAGAACACAGAAACCGATTCAACGCCTACGAATGATCTCGAAAAGGGCATCGATCGAAAGAATAACTCGTGTAACAGGTGTTCGCGAGTATTTAAAAGGGAGTCGAATCTGAAGCGTCACTTGGcgaattgccgaaaaaaatcgCGCGAAGATGTAACGACGGCAAGAAAACCGGAAGTCCCGAAGAAAAAGGCAATAGCGTTCGAAGAGGAAAAACCTCGTGCCGATAATTCGGAAGAATCCGAGAATAAATCCGACTCGTGGAACGAGCGGGAAATACCGACGAAAAAACGTCTTTCCGTCTTTCCCTGTGCGTACTGCGATTATACAACGAGAACAAAGAAACTGCTGAATCTTCATGCGAATGAGTATCACACCGATATCGCTGATAATCGACGCGGAAAAAAGCATCGTAGCGTTGATAAGGATCTCGTCGATCGCGCGAGAAAAGAAGCGAACGGTCGCGTTTACTATCATTGCGAGAATTGCGGAAAGAATCTCTTCTCGCCGTATACGTTTGCGTGGCACGTGAGAATTCATACCGGGGAACGACCGTTCACTTGCCATCTGTGCGGCAAACAATTTCGCGTTAATCAGGGTTTGGCTCGTCATTTACGCGAAACTCACGCCGGTATTAAAAAATTTCCTTGCGACATTTGCTCGCGTATGTTTTCGACGAAGAGAAACGTCGAGGATCACCGGCGCATACACACCGGCGAGCGTCCCTTCGTCTGCAACGTGTGCGGCAAAGCATTCAAGCAAAAAGCATCGCTCTTCGTACACAATCGCACGCACACggatttttttccgtataaatgTAGTTATTGCGAACAAGGATTTCGCACGAGACCGCCGTTAGTTGTGCACATTACGAAGCACACCGGCGAGAAGCCTCACAATTGCGACATTTGCGATCGCGCCTTCCGCATAAAACACGAACTTAAACGGCATCGTTTGATACACTTTGACGAAAAACCGTGGCAATGCAACGATTGCGGATTGTCTTTTCGGCAAAAACGATATTTGGTTAATCATAAGAAAATTAATCACTGTTCCGTACCGAGAACTTCGTCGTCAGCGAGTCACGAACATACCGGCGAAAAACCCTTTACTTGCCACGTTTGCGGCAAAAATTTTCGACACGGTTCCGTTCTTAATAGGCATCTTCGCGACGTTCACGCGGGCAGTAAGGAGTTTTCTTGCGATCTTTGCGATCGTCGTTTAGCTTCGAGAATCGCTCGAGACGAACATCGAAGAACTCACACTGGGGAACGACCGCACGTATGCGAAACTTGcggaaaatcgttcaagcaaagGGCGTCGCTTCACGTTCACAAACGCTTCTCGCATACAGACAGGAAGTATGAATATCCGTGCGAAATATGCGAGAGAGCGTTTCAACGAAAACAGGAACTCGAGAAACACCTGTTGATTCATAGCGGTAAAAAGCCGCACGTGTGTACCATTTGCGAGAAACGCTTTCGTACTGCCGGTTGTCTGAGTCGTCACGGAAAAACTCACAGCGATCTGAAAATCCACATTTGCGAAAGATGCGGAATGAAATTCGGACAACAAAGATATCTGAAGAATCACACGAGAAACGTTCACGGAACGACTTTGTAA
- Protein Sequence
- MFKLSRLTPSRRTSIDAIVANNEESKNPENMDISLENCEYTDSTEQNFLFEICRVCANKNDHIIPIFEGEGAEHDLSNKIHKYLPIQISKNDTLPLQLCYHCAATLLAWHELIEGCEDAEKRLLRMESKLREKEQMRLKDAEVPISNDVTERINVASEEHIDDPEPITSKKEEQICLMEKEEEPNESVEHAASPEDKERFGKSKKPFKIFLDAQNIQCEKSRNVKSEVRDEKRSTREDTETIWRDALYATIENQLPNLESPIRVDEDLECSVEETFAKPEETEPIAPLDIENMKKETFVSREDDSQRSLHPEERESAPSDESNNEGSRAKCNICSQQFSHINDLHAHARQHKDLPETRKIYECVECAKSFRLKDSFVRHLRIHRDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKNFSCDICAKCFSSKATRDDHRRTHTGERPYVCDTCNKSFKSKACLYSHNKLHTNEFPHHCAYCNKKFRRRQEMLVHATTHTGEKNYSCDVCYKRFRVKTEVVRHKLTHSDEKPFVCAKSGVTRSFTTYVGKRREASNGSLKIAIVTRLSDRRQRDADLRNENTETDSTPTNDLEKGIDRKNNSCNRCSRVFKRESNLKRHLANCRKKSREDVTTARKPEVPKKKAIAFEEEKPRADNSEESENKSDSWNEREIPTKKRLSVFPCAYCDYTTRTKKLLNLHANEYHTDIADNRRGKKHRSVDKDLVDRARKEANGRVYYHCENCGKNLFSPYTFAWHVRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICSRMFSTKRNVEDHRRIHTGERPFVCNVCGKAFKQKASLFVHNRTHTDFFPYKCSYCEQGFRTRPPLVVHITKHTGEKPHNCDICDRAFRIKHELKRHRLIHFDEKPWQCNDCGLSFRQKRYLVNHKKINHCSVPRTSSSASHEHTGEKPFTCHVCGKNFRHGSVLNRHLRDVHAGSKEFSCDLCDRRLASRIARDEHRRTHTGERPHVCETCGKSFKQRASLHVHKRFSHTDRKYEYPCEICERAFQRKQELEKHLLIHSGKKPHVCTICEKRFRTAGCLSRHGKTHSDLKIHICERCGMKFGQQRYLKNHTRNVHGTTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398270; iTF_00841283;
- 90% Identity
- -
- 80% Identity
- -