Csec003683.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:313599-317298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.31 8.8 6.5 1.6 2 23 148 170 147 170 0.88 2 11 0.02 0.56 10.3 4.6 2 23 302 324 302 324 0.91 3 11 0.022 0.62 10.1 4.5 3 23 397 418 396 418 0.95 4 11 0.0095 0.27 11.3 0.3 2 23 650 672 649 672 0.92 5 11 0.0012 0.033 14.1 2.1 2 23 753 775 753 775 0.97 6 11 0.049 1.4 9.0 2.2 2 22 807 827 806 829 0.88 7 11 0.015 0.43 10.6 3.6 2 23 883 905 882 905 0.96 8 11 0.033 0.93 9.6 2.0 3 23 920 941 918 941 0.94 9 11 0.00032 0.0091 15.9 0.7 2 23 989 1011 989 1011 0.94 10 11 0.19 5.4 7.2 1.1 1 23 1111 1133 1111 1133 0.98 11 11 0.12 3.3 7.9 0.4 2 23 1149 1170 1148 1170 0.96
Sequence Information
- Coding Sequence
- ATGAGTTCTACTGTTGTTGACTCAGCAACGGCAGGAACCGGGAGTGTAATCAAAGGCGCAGAGTACAGCGACGGGGAAGACTCCTCCAGTTCCAGCGAGGAAGTAGAACACCACGATGAAGAGGACATGGCCCCAAACAGCGTCATCGAAACTCCAAGCTACAAACGTCCATTTCAGGACAGCCAATCAGAAGCTGACCAGTCTCAAGTCAAGAAGAGACGGAAGCAGTCAAAACCTGTTCGACTGCTTTCACTCACGGAGCCATCCAGCGACGATGAACCGGAATCCAACAACGAAGGTAAGACACACAATGAAAAATCACCAAATCCAGCCCATGGACACACCGATACGGAACTGGAAATGGACCTTAAGGCAGAGCCAGAGTTGGAACTAGACCCAGAATCGGATACACTTAAGATATATGATCACAGTTCTTCTTCGCAATGCCCTCATTGTCCTGAGATTTTAAACTCCAAAGAACATCTTAAATTTCATACCGAGAATGGACATTTTCAAACCCAGTTTCAACACAAAGTAGGAAGCGACAATTCACATGGCAGTAAGTCAGAAATACCGCTTAATCTCTCTCATTTACGAACCACAGACTCAACTTCGCATATAGGTTTCGCTGTAAGATCTCTAATATCCGAGTTTCGAAATAAGACAGATGATTTAATCCACGGGACCAAACCGCAAGTAGTGTTACCACAGACTCATGATTCTGGCAGTTCGGGCTCACTTGTTGATGGGAACATTTCTCTGCCTGGTTACATGCCCCTATCGCCACATTTCTTGTTGCCTCTCATGTCCCAAAGTTCAGGGCTTCACTCCACTTCCTCACTCACACAGAACCAAGGACAAGCTCCTGGCACAACTTCTATACGAATATTCAATCCTGACGCttattgtgaattgtgtaacaAAGAATTTTgcaacaaatattttctaaagACCCATAAAGCTAATAAGCATGGAATTTACGTCGATGGTCCTAGTACTACACTCGGTGGAACTATGATTCCTGGCCCCCATTACCCAACTCCTTTGATTCAGGTTAATTTAAATCTTTCCCGGACAACGTCTACTGTATCAGGGACACATAATCCAAAAACTCCATCACTTCCTCCCGGAATATCCGAAAATATAATCACGAATAAAATACCTGGAAACGCACAGCTGAAATCATTTTGTGATATCTGTCAAAAGAAATTctgtaacaaatattttgttaggCGACACAAAGCGAAGATTCATGGAATTATCGACGAGTCTCTCCCTGCATCAGGGAGTACATCTTTCCTGAACTCATCGGATTGTCTTAGGAAACAAGAGACCGATGAACGAGGAAGCACATCGGCAGGTTCAGATACTGGGTCAAATGTTGTAGACACTGTTTCCAGTGACATACCAGAAAACATTTCGGAAGTGGGAGAAGTGGGCGTCAGCTCGCACGAGAAACATTGCAGCAACCTGGAAATGAAGCTGAGTCCTGCAAACTCTGTTACAGATGAAGCTGTGGAAGCTTCAAAGGTGAAAGAGGAACCCGAGCAAGATTCAGAGGAAGGCCGTTCAGTGGGAGATTATCCGGATATTAGCTCAACAAATTGCACCAAGAATTCGCCAACTCCTTCTCAGCAAAACTCGAAAGAAATCGCATTATCTTCAGATCGGTTACGAAAGTTGGGTGTCATTAATGCCGATGCATTTTGCGAGATATGCTGTAAGGAATATTGTAATAAGTATTTCCTGAGGACGCACAAAATGAAACGTCACGGTATTTACATTTCAGAAGGTGATGGGAAAGAACTTAAAACGGGGGTTAGTGGCTGTACTGCATGGACTTACAATCGGATGAGCCCATTAAATTTAATAGTAGGTGAGCAGGGTACTAACAGTTCAGATTCCGGAGACAAAATAAGGAACGACTTCTCTGATATCGACGATTCGGAATGCGACATCTGCGGACAGCGGTTTCAGAGCTTCTACCAGATGCAGGTACATCGAGCGTACCTGCATGTTACGGGGAGCGAGAGGACGGAGGGACAGGAAGATCCGGGTGGACTTGATTCTAAAGCTCATGAGAATATTAGTACAAATTTTGAGAacggaaatatgtttaaaaatagTGACAAATCGACGGCTGAAGAGGGACCTATCAACAATAACAACGATGGGAAAGACGCCATTAGTGAAGATCTGCAGAAACTTCAAACTATGATATTGCAATTGAATAACCTTAACGTAAGTAAAGTGGCTACTTGTACCATTTGCAACAAAGTGTTAGAGAATCATTACTGCTTGGCAGCCCATATGATGACGGAACAtggtattttaattgaaggtCAAAATGGCGTTGAAAGACAAAAACCTCCATCTGTGGAGGTGACTGGCATGTCTCCTCTCTCAAGCACGAATACGTATTGCTTCTCATGTAAGAAAGATTTCTTCACCCAATATCAGCTGAAGCAACATGTGGACGATTTTCACAATTATGCTGTAACAACGATAGCATCAACCTCGACCACAGTGATTAGTAACATGATTAAGGAAGAGTTGGAGACCAAGTCACCTCCTGAGAAGCTTCAGAGTCAGCCAGCGACTCTCGTAGGATCAGAGAAACGAATTTCTGTGACGCCGACGAGCAGTTACTGTGAAATTTGTAACAAGGAATTGTGCAATAAGTACTTCATGAAGACGCACATGCAACGTATGCATGGCATTGAGATCGAGAATGGAGCGCAAATTGGTGGCGTTATTTGTGACATCTGCAACAAGGAACTCTGTAGCAAGTATTTTCTACGCGTGCATAAACAGAATACCCATGGAATTGTTGAAGATGGAGCCGTCGCTCACTCAGCTAAGGACAGCGTGTCCAATATACAGCTTCAAGTAGAGGGCGACCAGGCTTTGAAACCGTCCGACCTGAGTGATCTAAGTCACAGGTATTTCAGCCACTTTACTGAGGTTTGTTCAATATGTAACCGCCGCTTCCGAAGCACAAAGTGGCTGAAAGCACATCTCTTGAACGACCATGGTGAGAATGGTGTAGAAAAATGGAAAGAATTGGAAAATCAATATCAACTTATTTCGCAACAAGGGAAACATCAATTACAGTCAGCCAGGAGCTTTGGAACAGTCAACAATTCTTCATCTGGTCCAGGGTGTACTTATAGCCCTACTTTGAAAATTCCGAACAACTGGCACAGTCAAGATCAGGACACTGGCTGTTCACGGCCGCCCGCTCTAACGCCTCAGGAACGCACAGGAGATGCGGGCGGGCATCAGGTGTTTGCAAGTCTCTTCGGTTCCGGAGATTCGACAGTAAAAAGCTATCACTGTTCCTATTGCCCATTTACGACGCCTGTTCTAGCATTTCTGTTTGTCCATGAAAGATCCCACGGAGGTCTGATTTCGCAGCCGTTACCTGACCCAGCAAAACCGTTACAATGTCCTGTTTGTCTGCAGAGTTTCCTCCAGGCCGAAGTGTTCCAACACCACATCCTAACCCATCAGTTCTCAGGCGTTTTAAATCAGTTTCTAGGCCCTGCATCGCCAGCCCAGTATCCACCGCAAAGCGGCAGTTTGCAAGAACGAATGAAGCTTGTTGAGCGACATTCTCCGAACAACGAAGAAAATGGAGATAATTTGAAGAATGCAGAAAAGTTGGAAGGCGAAATAATTGAAGAAGATTCGATGAATG
- Protein Sequence
- MSSTVVDSATAGTGSVIKGAEYSDGEDSSSSSEEVEHHDEEDMAPNSVIETPSYKRPFQDSQSEADQSQVKKRRKQSKPVRLLSLTEPSSDDEPESNNEGKTHNEKSPNPAHGHTDTELEMDLKAEPELELDPESDTLKIYDHSSSSQCPHCPEILNSKEHLKFHTENGHFQTQFQHKVGSDNSHGSKSEIPLNLSHLRTTDSTSHIGFAVRSLISEFRNKTDDLIHGTKPQVVLPQTHDSGSSGSLVDGNISLPGYMPLSPHFLLPLMSQSSGLHSTSSLTQNQGQAPGTTSIRIFNPDAYCELCNKEFCNKYFLKTHKANKHGIYVDGPSTTLGGTMIPGPHYPTPLIQVNLNLSRTTSTVSGTHNPKTPSLPPGISENIITNKIPGNAQLKSFCDICQKKFCNKYFVRRHKAKIHGIIDESLPASGSTSFLNSSDCLRKQETDERGSTSAGSDTGSNVVDTVSSDIPENISEVGEVGVSSHEKHCSNLEMKLSPANSVTDEAVEASKVKEEPEQDSEEGRSVGDYPDISSTNCTKNSPTPSQQNSKEIALSSDRLRKLGVINADAFCEICCKEYCNKYFLRTHKMKRHGIYISEGDGKELKTGVSGCTAWTYNRMSPLNLIVGEQGTNSSDSGDKIRNDFSDIDDSECDICGQRFQSFYQMQVHRAYLHVTGSERTEGQEDPGGLDSKAHENISTNFENGNMFKNSDKSTAEEGPINNNNDGKDAISEDLQKLQTMILQLNNLNVSKVATCTICNKVLENHYCLAAHMMTEHGILIEGQNGVERQKPPSVEVTGMSPLSSTNTYCFSCKKDFFTQYQLKQHVDDFHNYAVTTIASTSTTVISNMIKEELETKSPPEKLQSQPATLVGSEKRISVTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKQNTHGIVEDGAVAHSAKDSVSNIQLQVEGDQALKPSDLSDLSHRYFSHFTEVCSICNRRFRSTKWLKAHLLNDHGENGVEKWKELENQYQLISQQGKHQLQSARSFGTVNNSSSGPGCTYSPTLKIPNNWHSQDQDTGCSRPPALTPQERTGDAGGHQVFASLFGSGDSTVKSYHCSYCPFTTPVLAFLFVHERSHGGLISQPLPDPAKPLQCPVCLQSFLQAEVFQHHILTHQFSGVLNQFLGPASPAQYPPQSGSLQERMKLVERHSPNNEENGDNLKNAEKLEGEIIEEDSMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -