Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:237202-247261[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00075 0.021 14.7 3.2 1 23 463 485 463 485 0.97

2 8 0.0011 0.031 14.3 0.8 1 23 491 513 491 513 0.97

3 8 9.1e-05 0.0026 17.6 1.8 1 23 519 541 519 541 0.96

4 8 0.18 5.1 7.3 4.5 1 23 547 569 547 569 0.94

5 8 9.7e-05 0.0028 17.5 2.7 1 23 575 597 575 597 0.96

6 8 0.0094 0.27 11.3 1.3 1 23 603 625 603 625 0.96

7 8 1.9e-05 0.00054 19.8 2.0 1 23 630 652 630 652 0.99

8 8 0.025 0.73 9.9 1.8 1 21 658 678 658 680 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00075	0.021	14.7	3.2	1	23	463	485	463	485	0.97
2	8	0.0011	0.031	14.3	0.8	1	23	491	513	491	513	0.97
3	8	9.1e-05	0.0026	17.6	1.8	1	23	519	541	519	541	0.96
4	8	0.18	5.1	7.3	4.5	1	23	547	569	547	569	0.94
5	8	9.7e-05	0.0028	17.5	2.7	1	23	575	597	575	597	0.96
6	8	0.0094	0.27	11.3	1.3	1	23	603	625	603	625	0.96
7	8	1.9e-05	0.00054	19.8	2.0	1	23	630	652	630	652	0.99
8	8	0.025	0.73	9.9	1.8	1	21	658	678	658	680	0.93

Sequence Information

Coding Sequence: ATGGATGTGATTGGCATGGGGCCACTCCACCCAGAACTTCTCATAaaggaagagaaaatgtttGTCATTTCTGGCGTGATGGAAGAAACCGAGTTCTTTGGCAGGACCAAGGGTCAGGAGCTGGCTTCTGTGCCAGGAGGTTCCATAAAGGTTGAACCAAAAGAAGAAATTCCAGAGGTTAAGGATGAAGTAAAAAGTGAAATAACTGTAGAGGATCAAGCAGTGGATTGTCAGGATATGTTTGGCCCCTGCTTCCAGAAGCTAGtgaaacaagaagaagaagaagagacagACACAACTTCAGAAGACCGTGAACTGCCTTCACCATCACAAACTGTCAATCCATTTCTTGGAAATGCACAGGAATGTGGTTTATACTTCTATAACGAGTGTGCTGGTTGTTTTAAATCAACTGTCAGTATGAGGAATGAATGTTCAGATCATGCAGGATCATGTTATGAGCTGTGTGTGAATAATACCAAGGAGTCCAGCTGTGACCAGGTACAAATGAACATCCCTGTAGAGGAATTTGAACCCAAAGTCGACACATTCATTTCTGATTTTAGTCCATCTGTACAAAGTTACAGAGATAAACCATTGAAAATGGACCCCATAGTGAAACTCCCAAGGTTGGAGTTGTCTGCATTTGATATGAAACACATGGACAGATCAGAAATGGGGACTGACACTGGTAGGCTGCAGCTTGGTAACTTCTGTATCAATACGGACACCGTAAGTGACTCGAAAATAGCTACGGTTTCTGAATTCCCTACACTACAGGATGTAATTGTACATGCAAGTTGTCATAATTCTGTAAATGACTCAGGAAGTATGGCAAACAGTTTTAGCCAACACAAGAATGAACATAACATGCAGAGGGCTATAAATTATGATCAGGTAGAGACATTATCTAAGGGCTTGCTTCTGAAACAGCAGTTAGAGCATCATGCAAGTGGatccagttctacaaagattcCAAAACATGAAACAGTCAGTCACAAGTCACAGAATagtaaacataataaaatcGAAACTATGGAAAGTACATTAAAACCTACTAGGAGGTTGTCTTCGAATTATAAGTTAACAAAATGTTTGTGTGATTGTAGCACATCACCCAGTGTGGAAGGAAAAACAGGTGAAAATAGTAGTGTCACTATTGGGAACACGGTGAAAGAGTCCAAGAGATTAGCCTCAGTCTTTGAGCTGAAGCAGCATTTGAGTGAAAACAGTTCTGCAAGCGTTGCTGAAGATGAAGCAGAAGTTGCAAGACAACGAGATAGCTGTGAGGCAGAACAGAAGAAAATTACGGTTAtaccaaaaattaatattaacagcATCCAGAAAAAAATGCAGCATTCAAGAGCCCACATAGCTGATACTCCATACTACTGCAACAGATGTAAAaagcagtatgctacaagtcgtaacCTCCAGGAGCATTACATGTTCCACACTGGAGCACAACCATTTGTGTGCAATGTGTGTGCAAAAATGTTTCCTACACTGATACAACTCGTGAAGCATTCTCACACACATGTAAGAGGCCAAACTTACGATTGTCAATTATGTGACAAGAAGTTCAGGTTCCTCGTCAGCCTCAAAAGACACATCCTGTTCCACACTGGTGAGAGACCATTTGAGTGTATACTGTGCAATAGAAAGTTCTTCACTTTGCTCCATCTAAAAAACCACATTCATATACACACTGGTGAGAAACCATATGTGTGCAGATTGTGTTGGAAGGGATTCTCATCACCTTCAAGCCTGAGGAAGCATCGTTTTCACCATGCACGAAGACAGTCCTATTTGTGCAAATTTTGTAACATTGAGTTTGGAAGGTACAAGCTATTCATGAGGCACGTCGAGACACACAAGAGTAGGAAGTATGAATGTAGTGAGTGTCACAAAGTGTTCTCAAGTCTCATGCTGGTAAAGAAGCATGCCAGAACTCATTCAGCTGTTCAGCCATATGCATGTACCCTCTGTAGCAGCTCATTTTCAAGATCAACTTCGCTCTTAATGCATTACCAGTGCCACAGGCGGTTTGAGCACCATGGATTGACTAACCTTCACACAGCATGA
Protein Sequence: MDVIGMGPLHPELLIKEEKMFVISGVMEETEFFGRTKGQELASVPGGSIKVEPKEEIPEVKDEVKSEITVEDQAVDCQDMFGPCFQKLVKQEEEEETDTTSEDRELPSPSQTVNPFLGNAQECGLYFYNECAGCFKSTVSMRNECSDHAGSCYELCVNNTKESSCDQVQMNIPVEEFEPKVDTFISDFSPSVQSYRDKPLKMDPIVKLPRLELSAFDMKHMDRSEMGTDTGRLQLGNFCINTDTVSDSKIATVSEFPTLQDVIVHASCHNSVNDSGSMANSFSQHKNEHNMQRAINYDQVETLSKGLLLKQQLEHHASGSSSTKIPKHETVSHKSQNSKHNKIETMESTLKPTRRLSSNYKLTKCLCDCSTSPSVEGKTGENSSVTIGNTVKESKRLASVFELKQHLSENSSASVAEDEAEVARQRDSCEAEQKKITVIPKININSIQKKMQHSRAHIADTPYYCNRCKKQYATSRNLQEHYMFHTGAQPFVCNVCAKMFPTLIQLVKHSHTHVRGQTYDCQLCDKKFRFLVSLKRHILFHTGERPFECILCNRKFFTLLHLKNHIHIHTGEKPYVCRLCWKGFSSPSSLRKHRFHHARRQSYLCKFCNIEFGRYKLFMRHVETHKSRKYECSECHKVFSSLMLVKKHARTHSAVQPYACTLCSSSFSRSTSLLMHYQCHRRFEHHGLTNLHTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -