Csec007895.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:408595-429989[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.02 0.57 10.3 0.0 1 23 608 630 608 630 0.97 2 9 0.18 5 7.3 0.1 2 23 637 659 636 659 0.93 3 9 0.0028 0.079 13.0 0.1 2 23 682 704 681 704 0.94 4 9 0.016 0.45 10.6 0.2 1 23 838 860 838 860 0.98 5 9 0.00014 0.004 17.0 0.7 2 23 867 889 866 889 0.96 6 9 0.006 0.17 11.9 0.0 2 23 911 933 910 933 0.94 7 9 0.018 0.5 10.4 0.2 2 23 1056 1078 1055 1078 0.94 8 9 0.27 7.8 6.7 0.2 3 23 1107 1128 1106 1128 0.95 9 9 0.7 20 5.4 0.0 5 22 1138 1155 1135 1155 0.91
Sequence Information
- Coding Sequence
- ATGGCATACCTTCATGGGAGAAAACTATATAAAGCACTAGATGACTTGAGTAAGAGAATTCCTGTGGTAAAACTGGAGCGACTGGAAGCAGTGTACCCAAATTTCAAGGAAGCTGCTCATGAGTCACTGGTGTATTCTGACAAGGCTAATAAAAAGAAGAGAGAACAAAGTAATGTGAATAGAGAATTTGACAGAAGAGTAACAGGAGAGTCAAATGATTGTGGTAGATCAATATTTCCTGATAGTTGCAATGCACACTGTCAAGTTGATGACTCATCCTATTCAGAGCCTCCAAAGAAACAGTATAAATTCGAGGAAGATAGTGCCAGGTTTGATGGTTTGCTGTCCAAATCCTCAATACCTGGCCAGCTGGATGTTGTGATTGAAGAACGAAACACAGCGAACAATAGATCTGTGGTGAAAAGTGAAGTAGTGACAGTTGAGTGTGATCCAAATGTGATCTTAACATTTCCAGGCAATGATGATAATGCTCTAGATCTACTATCATTAGCTGTGAGTGATAAAAATAAAGGGCCCATCATAAAATCAAAAACTAACAGTGGGAAAGATGAAAGTGACCTGTGTCTGCAAAAGCATGCGGGAAAAAATGATTCTAAAGTGAGTACGTTGACATTCTGGGAAAGAGAAAGATCTGGGACAAAATTGCCGGTGTTGTCTGGAAACAGTGGGACAGAAGTAAACTTACCAACATTCTCTGAAAATGGTGTACGGATATCTGAAAATAACAGATGTGAGATAAATCCAGTTGCTTACTCTAGGGATAATGTGTCTGCAGTAAATCCACCATCTTGCTCTGGAATGAACGGACCACATCCAGAGCCACATGTGTGTGGTGAAAGTAACAGATCTGGAATAAATCCATCAATTTACTCTGGTGCGGGAATTAATCCATCAGTTTATCTTGGGAATAGTGAACTTGGGATACATTCATCTGCTTACTCTGGGAACAGTAGCATAAATTCAGCATCTTACCCTGTGTATAATAGACCAGGATATACTTCACCTCTGTGTCCTGGGAATAATGTACTTGGTATAAACTATCTGCCTTTCTCTGGAAGTGATAAGTCCGAGTTAAATCCATCTTATTCTGGAAATGATGGAATGGGAATAAATTCCTTGACATTCTCTGGGAATAGACGTACAATGATGCCACTAACATATTATGGGAATGATGCATCCGTAATAACTCCACAGACTTATTCTGGGAATGGGCCAAAAGAAAATTCATTAGCTTATTCTGGCAGTAATAGCTCTGGGATAAGTGTACACACTTATCCTGGGAATAATGAATCTGGAACAAATACTTTGACATACTCTACTAACAATGGACCTTCATTGTCTTATTGTGGCAACAAAGGATCTGTGGTAAATTCACAACCTTACCCCACAAACAGCAGAGACATGTTGAATTCACAGAGTTACACTGTAAATAGTGGACCTGGGATTAGTTCTTCATCTTATTCTGGTAACACTGGACTTGGAATGAAGTCACCAGCTTATCATGAAAACAGTTCTCCATCTTATTCAGGCAACAGTGAATCTGGCTTGAATTCAGCTGCTTACTCTGGGAATAACGGATCTGGAGTAAATCACATGCGGTTCGTAGGGGGCAGCTCATTTTCTGGGAGTGAAGTGGCTCAGCAGTATGAAGTACTACAGAGCTATTGTGGAAATAGTGAATCCAGAATAGATAACACGTCATGCCAAGAAAGTACGTGGAGCAATGACTACATTACTCTGAACAGTCTTCCAACTAGTGGATATGAAGCAGCAGATTGTGTACAAGACTTTTCATACCTGTTTCCATGTCAGGTGTGTGGGAACATGTCAACTGTTGTAGATGAACTTATAAGACACTGGAGACTTCACACCGGAGTTGATTCATTGACGTGTACTGTTTGCTATGTATCATTCACAGATGTACTTTTCCTCCAGGCACATTGGAAAGCAACTCACATGGGAGGTGTATGTTCTGACTCTGGAGTGGTGTTAAGAAATCAGCCTGAATTCTTGCCACAGCTTGTTTGTGAAGCTTGTGGCTTTTCATTTGTACAGTTTTCTGCCCTTGAACAGCATGTAATGTCAACACACATTCCTATTACACAACACAGAGAAAGTGTGTCCTGGAGATCAAGTAACAATTTGGGATCATTGTATGGTGGTACCAACTCTCAGCAGAATAATGTAGTAAACAGTAAAAATCCTCAAGGTATTCCAATAATAAATAACCACTCCTTAGCAAAACAATTCACAGTATTAAAAAGTAATATAATAGGAACTGATGGCCAGGATCACTCAGTTATTGAACTGGAAAATAATGTATTGGAAAGTAATATTACAGAACATTCTATGATTAGGCATTCAGCAGCAGTGGCAAATAACGTGACAGaatctgatgatgacccagaAGATGTGGACACTGAAGGagatcatcattcatcagtggaCAGCAGAAAGGTCGAGTCTCTTTCTGGTCAGAATGGAAAGCTGTTCAAGTGTAAAGTATGTGGAAGTAACTCATACGATGTGAATGCACTCATAAAACACTGGAGGATACATATTGGAGCTAATTCCATGACATGTACCATTTGTAAAAAAACATTCTCAGATTTGCCTTTCCTTCAAGCCCATTGGAAGCGATCACACTTGCAAGGTAATCCAGTTCCAACATCAGTCAGCAAAAATCATTTAGCACATAATGAATCTTTGGTATGTGAAGCTTGTGGATATGCATTCCCTGATTTAACGGCTCTTGAGCAGCATTTATTGTCAACACATGTTACTGCGAGTTCATCTCATGTTCCTTTGAAAAACGTGAATTATGCAGACAATACACAGACTATGCCTCATGCTCACAAACAGAATGTGACACTAGGTAAAACAAAATCTCTTGATCTTATAACTCATAGAATTCAAGTAATGAATAACTACAAGAAGAGAGATGTAGAAAAGCAGCCAGAGACAGAGGGGTGTAAGGAAAGTGAGGACCCTGCAGAGATGAAAGAAAATGCGAAGAAACTAAATAATAAGTATAGTGATTTGGGTTCTAAAAGGAATAAGGACCGTGATTGGTGCCTAGTCTGTGGAGAAACTTCAGATGATATGATAAAACATTTAATAACGCATACTGGAGTTTTGTCTTTGGAGTGTTGTCTGTGTGGAAAGGACTTTGTTGATATACCATTCCTTCAAGCACACTGGAGAGCTACACACATGGATGGAGAGGTTTGCCAAATTAACAATTGTGTATATGTAGGAAATTACAAAGCAAATGTTTCTCATAAAGAGAAGCTGTTGTGTGAAACGTGTGGTTGTTATGTGCCTCAAATTTCTGCCTTAGAGAAACATATAATATTGACTCATACTGTTGTAAGACCACCATATGAATGCAAGTGTGATGATGTGTTTCCCTCTGAAGCTGAGTTAAAGAGACACATATTAACATGTAGTTGGTAA
- Protein Sequence
- MAYLHGRKLYKALDDLSKRIPVVKLERLEAVYPNFKEAAHESLVYSDKANKKKREQSNVNREFDRRVTGESNDCGRSIFPDSCNAHCQVDDSSYSEPPKKQYKFEEDSARFDGLLSKSSIPGQLDVVIEERNTANNRSVVKSEVVTVECDPNVILTFPGNDDNALDLLSLAVSDKNKGPIIKSKTNSGKDESDLCLQKHAGKNDSKVSTLTFWERERSGTKLPVLSGNSGTEVNLPTFSENGVRISENNRCEINPVAYSRDNVSAVNPPSCSGMNGPHPEPHVCGESNRSGINPSIYSGAGINPSVYLGNSELGIHSSAYSGNSSINSASYPVYNRPGYTSPLCPGNNVLGINYLPFSGSDKSELNPSYSGNDGMGINSLTFSGNRRTMMPLTYYGNDASVITPQTYSGNGPKENSLAYSGSNSSGISVHTYPGNNESGTNTLTYSTNNGPSLSYCGNKGSVVNSQPYPTNSRDMLNSQSYTVNSGPGISSSSYSGNTGLGMKSPAYHENSSPSYSGNSESGLNSAAYSGNNGSGVNHMRFVGGSSFSGSEVAQQYEVLQSYCGNSESRIDNTSCQESTWSNDYITLNSLPTSGYEAADCVQDFSYLFPCQVCGNMSTVVDELIRHWRLHTGVDSLTCTVCYVSFTDVLFLQAHWKATHMGGVCSDSGVVLRNQPEFLPQLVCEACGFSFVQFSALEQHVMSTHIPITQHRESVSWRSSNNLGSLYGGTNSQQNNVVNSKNPQGIPIINNHSLAKQFTVLKSNIIGTDGQDHSVIELENNVLESNITEHSMIRHSAAVANNVTESDDDPEDVDTEGDHHSSVDSRKVESLSGQNGKLFKCKVCGSNSYDVNALIKHWRIHIGANSMTCTICKKTFSDLPFLQAHWKRSHLQGNPVPTSVSKNHLAHNESLVCEACGYAFPDLTALEQHLLSTHVTASSSHVPLKNVNYADNTQTMPHAHKQNVTLGKTKSLDLITHRIQVMNNYKKRDVEKQPETEGCKESEDPAEMKENAKKLNNKYSDLGSKRNKDRDWCLVCGETSDDMIKHLITHTGVLSLECCLCGKDFVDIPFLQAHWRATHMDGEVCQINNCVYVGNYKANVSHKEKLLCETCGCYVPQISALEKHIILTHTVVRPPYECKCDDVFPSEAELKRHILTCSW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -