Csec006669.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:320347-334912[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.49 14 5.9 0.3 2 17 1881 1896 1880 1897 0.86 2 9 2.4e-05 0.00067 19.5 1.8 1 21 1952 1972 1952 1973 0.94 3 9 4.3e-06 0.00012 21.8 0.5 1 23 1978 2000 1978 2000 0.98 4 9 1.8e-06 5.2e-05 23.0 0.3 1 23 2006 2028 2006 2028 0.98 5 9 1.9e-05 0.00053 19.8 1.4 1 23 2034 2056 2034 2056 0.97 6 9 0.0014 0.04 13.9 3.2 1 23 2062 2084 2062 2084 0.98 7 9 2e-05 0.00057 19.7 1.0 1 23 2090 2112 2090 2112 0.98 8 9 0.00055 0.016 15.2 1.1 1 23 2118 2140 2118 2140 0.98 9 9 0.067 1.9 8.6 5.5 1 23 2146 2168 2146 2168 0.96
Sequence Information
- Coding Sequence
- ATGCAGTCGAAGAATAGGGAAACTGCGGTTATTTCCGATGGAAACAGGGAGCTAGGAACATTACTGCAGAAAAAGGAAACAGACATACAGCGCGTAAAGGAAGAGAACAGACTTCTGGAACTGAAGTTGCAGAGAACTGACGCAGAATTTCTAAGCTTGACaaacaaaaatacagaaatcGTGGGACTTCTGAATAGCACAAAACGTGGACTACTACTGCGTGTACATAGTGAAGAGGAGCTGGAAAACATTCCAGGCGATAACTTTGACCTTAAAGGAAAAATGAGTGATTCTGAAGGAAAATTGATCTATGATAATACAATACTCACAGCGACTATAGAGGATTCAGAGTGGGAAATTCATAAACTCACAGAAGAAAACTCGCGTCTACGACAGGAACTTCATGAAAAGCGAAAGGAAGAAGAGAGACTAAGAGATGAAAATATGAGATTCGATAGAGCACTGCAGGAAAAGGAGCCACAACTCGAAACTCTGACAGATGAAAATAAGCTGCTTAGACAGGCGTTCAAGGAAAAGGAAATGGACATCGAACGCTTAACAGAAGAAAACATGAGATATGAGAAGGAACTGGAGGAGAAGGAACAAGAATCAGAAAACCTTGCAAACCGTAATTCACAGCTAAAGGAAGATTTTCGTGAGAAACGATCACAGATGGATGATCTTTTAGGTGAAAATACGCGTCTTGAAAAATCAATGCAAGAGACAATGTCAGAAGCAGAACGccttgaggttgaaattgcgcGGATTCAAAAGGAACTTCACGGGAAGGAGTCGGATACAGACCGTCTGAAGTGCGAGAATGCAAGATTGGCAAATCTGCTGCGAGAAAGTGAAACCGAGGCAGAGATGTTGAGAGGAGAAAATACACATCTTGATAAAGAACTGCATGAGAAGAAATCCGAAACTGCTCTCACGACGGAACAAAATGTGTATCTGAGTAAAGAATTACAAGTTGGGAACGAAGCTTTAACAGTCTTGACAGAAGTAAACGAAAGACTTCGCAGTGAACTACAGGACAAGAAAGCAGCGACAGAACAGCTGACAGAAGAAAATATGCGCCTTAGTAAAGAACTACAAGAAAAGGAACCCGAAATAGAAAGGctagaaaaagaaaacacacacattAGAAAGGCATTGCAGGAAAAGGTACAAGAAATAGAACAtctgactgaagaaaataaaagactCTCAAAAGAATTACACGACAAGAAAGCAGATATAATGgcaattacagaaaaaaatacacATTATTGTAAAGTAATTCAGGAAAAGGAACACGAAATTGAAATCTTGGCAGAGAAAAGTGCGTGTCATGCGAAAATACTGCACGAAACAATGACAGAGATAGAATGCTTGACACAGGAAAATACACGCATTCAGAATATCTTACACGAAAATGAGGCGAAGACAGTAAGTCTGACAGGAGAAAACATTCGGCTTGACAAACAACTGCAGGAAAGTGAACTGAGGATAGAGGGAGCGACAGAAGAAAATGAACGTCTTCGTGAAAAACTTAAAGATAATGACTCCATTATAGAGTGCCTCACTGCAGACAATTCACGATTAAATAACGAATTACaacagaaggaaaaagagatAACACATATCACAGAAGAAAATGCAGATATCTGGAAAGAATTACAGGAAAAGTGTCTGGAGGAAGAACACCTAACAGAAGAAATAACACGACTCAGGAGAGGAAAAGAAGAGAAGAACCTCAAGATAGACAACATCAAGGAAGATCATTCACAACTGGAAAGAAACTTACAGGAGAGTGTGGCAGTGATGCGGAAACTGACGGAAGAAAATATGATACTCGGACAGCAACTACAGCACAAAAAATCTGATATCGAATGTCTGACAGAAGAAAATGTAAGACTCGAAACGGAGCTGCAAGAAAAGGTACGAAGGACAGAATCCATCACAGAAGAAAACTCGCGGATACGTGAAGAATTAGAGTCTAAAGGGTCAAAGATAGAACTATTAACAGAGGAAAATATATGCTATGCAAGAGAAGTAGAACAAAGCGCTGACGAGATTGAGCGCCTCGCAGAAGAAACTACACTCCTATTAAAGGGACTACACGATTATAAAACAGAGAAGGAAcgcataaaagaaataaatgtaggGCTGGGAAAGGATATGCAGAAGGAAATACTGAAGACTGAGCaacttacggaagaaaatgTTGTTACTGGCAAGGCGTTACAAGAGAAAGAAGCAGAAACAGGAAGATTAGCGATGGACAATTTGCAGCTAACAAGCGAACTGCTACATAAGAAACAAGAGACAGAAAGCTTGgcaaaagaaaatgaattattGAGCAAGGAATTGGATGGGAAATTACCCGAAATAGCTCGAATTACAGATGAAAATAAACGGCTCGGAAAAGAACTGCAGGAGAAGGAATCAATGACAGAAAagcttacggaagaaaattcaaGACTCGCGAAGAAACTGCAAAGTGAGATAACACAAATAGAAGACCTCACTAACCAAAATGTGAAGCTTGGGAAACGTTCTGTAGAGATTGTTACAGAAGCAGAGCgtcttacagaagaaaattcaCGTATGAGAAAATGTCTGCAAGAGAAGAAATCTATGTTACAACACGTGACAGAgcaaaatggaaatattggcAAAGAACTGAAGGAGTTCGAACAGGAAATAAATCAATTTACAGATGAAAACAGGCGACTAACTGAActcgcggagaagagaaaaacagaTATTCACAGCTTAAAACATGAAAAGCTTCGGAAAGAATTCCAATGGAAGAAATCAGAAATAGAAAGACTGAAGCAAGAAATAGCCCAGAACGAAAAAACAGAAGAATGGAAGGGCCTCTTGAATGACTTTACATTTATTGAACACAAGTTACAGACCGTGGAAATGCAGACGAAAAGTCAAATGGAAATGAACAGAAATCTCGAAGATCAGCTACACGAAAAGAAAGTAATTTTAGAGAatatggaaaaagaaaatgcaCAGTTggagaataaattaattaacacaGAAGAAGAAATACATATCGTAGCGGGCAAAGCCCGTGACTTGGAAATGAAATTACTAAGTAAAGAACAAACAATCAAGAGCCTGAGAGAGTCGTGTGATGTATATGGAGATCAGATACGGGCAGGGGTAAAAGAAATGCAGAGGTTAACAGAGAGAATAGGAGGACTGGAGAAAGATATGCAAGTCAAAGAAAAGGTGTCTCTGAAACTCAAGAATGAAAATTGTGACACTGGGAAAAAATTGCAGGAAAAGGATCCTGAGACAAAAGAAGTgacagaagaaaatgtgaaactgATGGCGATGCCGTTAATTAAAAAACGAGATCgtttggaagaagaagaaaacgagATATTGGGAAATGTTTCGGAAACACAAACGGGAAAATTCAATGTGCAGTTAATGAGAAAAATTAAAGATTTCCAAGGGCCAAGTTGTGATAATACTGATTTCGGAATGAACTTAAAGATGAAAGTGGAGGAATTAATGGAACTCACGGAGAGGAAGAGAACTGCCGAGGAAGGTTTCCTTTCTAAACAATGTGAATTACAGAAGTTCAGAGACGATAACACGGGTCTCATCAAAAGAACAGAAACATGGAAAGGCACAACTAGCTTCAGGGCACAAAATGTGGACTTCTGTGGAGGGAAACAAAACGAGAAAACAAATGTGGGGAACAAGGGAAATGATAATGATCTCGGGGAAGAATTTAGGAATGAGTCAGCAGTTTCCGAGATTGATAACTGTCACACAGAAGCAAGGAAACTGACCAAGTTGATGAACGTGAAGACGGGAATAAAGACGGATACAAGACAAACAGAAATTCAAAACACAAGTCGAAATGAAATCCACGCGGACAGCGATGGTGTGCAGCATCCTGCAACTGCAACTGGGATCAAGAGGCCGGGAGTCGGAAGACATGGCAAAGGAAACTTTCTGCAGGATCGAACTGATGATTCATCGGATAATGATAAGGAACTACAGGTAGAAGACACAACAGGCGAGAGCAAACGTTCGTGGGCCCACAACGGAAGAACAGAGGAAACAACGTTCCTGAAACAACTGAAGCCTCACTCTGTTGGGGATCTCAAAAGATTTCCCAGAATGCAAAGACATGTTAGTCTTGAtactgggttcgattccgtAATGATGAAGCCGAACATCATGATGAAACCGGATGGGATATCTGAAAACAGCAAATTGCGAAAGCAGCTGTCAGTCAACAGAAGTGAGCGACAGAGCGCTGTCGATGGCAGCAAAGGACGTGTTGTGCTAACGGACATGCCGCTCGTCAGTAGCAGCTACAAGGGGCAGATCCCTACAGCTGGCCCAAAGACCACAGAATGCACATCCATGCAGAAACCCGGCTGGGTGTACATGAATGCAGAGTTCTTCACTGTTAATGTGGCGGCTCTGTTGTTCACTCGAGCcatcaatgcaaagctggcattcCACTTGGCATCACACAAACAAATCCCATATTTGTTTAATGACATAATTCTGAAACTTGGAAAGCAAACGCTTTTTCTTCAGCTGAAAGATCGTCCGTGCCATAATAAGTATATTGACAAGTCACAGACTTTTCAACTGAAAGGAGACTTCAGTCTGTTGAGACATTACAAGTCATTCTGTGAAACAAAAAAACTGTGGACCCAAAGAAAGAATTTACAAGACTATGGTAGATTTGAAGACAGCATTTTTGTTGTATACACAAATGCTGTAATGTCTGATGATAATGGACGCAGTGCTGACTATACAGTTTGGCAGGAAGTTCTTTGTTCCAGgggaaaatatttcacgttCTCTGAGGATAAATTCCCAGAGGTTTATGAAATGTTCGAAAACTTAGAAAGATATAAACAACTGCTGGCCGATTCAACCTATAACTTGCAACTTACAACTAATCAACAGTTGCTTGATTTTGTCAGGAAAGTTTGGAACAGCAAGGCTGCCGCTCTTCCAGGGATAATTGAACTCAACAAGTTGCTAAAGGACCTTCAGGAGCTGGGAGACTTGTCACATTACAAAGAATTTTTATCAAGGTTTTGGTTTCTTACTGAACAAGGAACTGATCAGCAACTTGAGGAACAAATAAAGCAACAAATAGGACTGGCTTGTGGAATCTCTGAAACAAACTTGATTTATACTCGCTTCAAAAAAGAAATGGGTGACTGGTACAGATATTCAGATCAAGTTCTCACTCGAGAATCACAGCTCTGGAAGGATATCAGAAATGGAAATGACAGTTCAAAGAATGACATGGAGGTAATCAAAGTGGAACCAGATATTGACAGAGAAACACTGTTGGCGGTTTCCCACAGTGAAGATTCACAACTTGGCATAAAAGATGAAGATCATCCCGACCCATTCACTTTAGTTTCAGTTGAGATTGAAGACAAGACTAATCCAGATGATGGTGTAGGATTGAAGGAGATTAATAAAGTTAAAACCATACAGCAGTGTACTGAACCATGTCAGGACGCAGGAGCCAAATGTGACAGTCCTCAAGGAGGATCTGCTGCCTTTAACAATAAACCACCTTCAATAACACAACACAAGCCCAAGGGTAGATACAGAAAGAAACTGCAAAGTGCTGCAGATATTTGTACTTGTAGTGAATGTGGTATAGTATTCAAGATGTCAAAAGGATTGATAAACAAGGAGATTAAAATTCATATCTGTAACAAATGCAGTACAAGTGGTGCCAAAGAACCTATAAATCTTGCAGATGGCATAGAACAGACTCAGGAATGTGATCGTGGGTCCGCTGTTGATAGTAGTAGCAAAGAACATTCCGCAGATAGTAGTGAAGAAAAGCTACATGTGTGTCCGGAGTGTGGAAAGAGTTTCACGCGATCATTGGCTCTCAAGAAACACTACTGCATGCAAGAAAAAACCTATGTGTGTGAAGTATGCGGAAAACAGTTCACGCAGTCCCGTAATTTATTGGTCCATTCTCGCTCACATACTGGTGAAAGGCCATTTACCTGCAATATATGTAACAGAGGATTTTCTTATTCTGGGGACTTGAAAATACATATCCGTATACATACAGGGGAGAAACCCCATGTCTGTGAAGTCTGTAATAAggcattttcaaaacaaggaaagctAAAGATCCACTATCGGATACATACGGGAGAGAAACCGTATGTGTGCAAAGTATGCAAGAAAGGATTTTCAGAATCCCAGGTTCTCAAAAGACATTACCATACCCACACTGGAGAAAAGCCCCATGAATGTCCGGTATGTAAGAAAGGATTCACCAAACCGGGAAAACTTAAAATCCATTATCGNATTCACACTGGTGAAAACCCATATATTTGCACGGTGTGTGAGAAGAGGTTTAACGACACGCAAGTTTTAAAGGAACATTATCGTACTCATACTGGAGAAAAACCTTATGTTTGCAGTATTTGTATGAAATGCTTTGCTTTTTCAAAATCTTTGAAAAAACACAGTCACATTCATACAGGACACCCAATAACAAGACACTGA
- Protein Sequence
- MQSKNRETAVISDGNRELGTLLQKKETDIQRVKEENRLLELKLQRTDAEFLSLTNKNTEIVGLLNSTKRGLLLRVHSEEELENIPGDNFDLKGKMSDSEGKLIYDNTILTATIEDSEWEIHKLTEENSRLRQELHEKRKEEERLRDENMRFDRALQEKEPQLETLTDENKLLRQAFKEKEMDIERLTEENMRYEKELEEKEQESENLANRNSQLKEDFREKRSQMDDLLGENTRLEKSMQETMSEAERLEVEIARIQKELHGKESDTDRLKCENARLANLLRESETEAEMLRGENTHLDKELHEKKSETALTTEQNVYLSKELQVGNEALTVLTEVNERLRSELQDKKAATEQLTEENMRLSKELQEKEPEIERLEKENTHIRKALQEKVQEIEHLTEENKRLSKELHDKKADIMAITEKNTHYCKVIQEKEHEIEILAEKSACHAKILHETMTEIECLTQENTRIQNILHENEAKTVSLTGENIRLDKQLQESELRIEGATEENERLREKLKDNDSIIECLTADNSRLNNELQQKEKEITHITEENADIWKELQEKCLEEEHLTEEITRLRRGKEEKNLKIDNIKEDHSQLERNLQESVAVMRKLTEENMILGQQLQHKKSDIECLTEENVRLETELQEKVRRTESITEENSRIREELESKGSKIELLTEENICYAREVEQSADEIERLAEETTLLLKGLHDYKTEKERIKEINVGLGKDMQKEILKTEQLTEENVVTGKALQEKEAETGRLAMDNLQLTSELLHKKQETESLAKENELLSKELDGKLPEIARITDENKRLGKELQEKESMTEKLTEENSRLAKKLQSEITQIEDLTNQNVKLGKRSVEIVTEAERLTEENSRMRKCLQEKKSMLQHVTEQNGNIGKELKEFEQEINQFTDENRRLTELAEKRKTDIHSLKHEKLRKEFQWKKSEIERLKQEIAQNEKTEEWKGLLNDFTFIEHKLQTVEMQTKSQMEMNRNLEDQLHEKKVILENMEKENAQLENKLINTEEEIHIVAGKARDLEMKLLSKEQTIKSLRESCDVYGDQIRAGVKEMQRLTERIGGLEKDMQVKEKVSLKLKNENCDTGKKLQEKDPETKEVTEENVKLMAMPLIKKRDRLEEEENEILGNVSETQTGKFNVQLMRKIKDFQGPSCDNTDFGMNLKMKVEELMELTERKRTAEEGFLSKQCELQKFRDDNTGLIKRTETWKGTTSFRAQNVDFCGGKQNEKTNVGNKGNDNDLGEEFRNESAVSEIDNCHTEARKLTKLMNVKTGIKTDTRQTEIQNTSRNEIHADSDGVQHPATATGIKRPGVGRHGKGNFLQDRTDDSSDNDKELQVEDTTGESKRSWAHNGRTEETTFLKQLKPHSVGDLKRFPRMQRHVSLDTGFDSVMMKPNIMMKPDGISENSKLRKQLSVNRSERQSAVDGSKGRVVLTDMPLVSSSYKGQIPTAGPKTTECTSMQKPGWVYMNAEFFTVNVAALLFTRAINAKLAFHLASHKQIPYLFNDIILKLGKQTLFLQLKDRPCHNKYIDKSQTFQLKGDFSLLRHYKSFCETKKLWTQRKNLQDYGRFEDSIFVVYTNAVMSDDNGRSADYTVWQEVLCSRGKYFTFSEDKFPEVYEMFENLERYKQLLADSTYNLQLTTNQQLLDFVRKVWNSKAAALPGIIELNKLLKDLQELGDLSHYKEFLSRFWFLTEQGTDQQLEEQIKQQIGLACGISETNLIYTRFKKEMGDWYRYSDQVLTRESQLWKDIRNGNDSSKNDMEVIKVEPDIDRETLLAVSHSEDSQLGIKDEDHPDPFTLVSVEIEDKTNPDDGVGLKEINKVKTIQQCTEPCQDAGAKCDSPQGGSAAFNNKPPSITQHKPKGRYRKKLQSAADICTCSECGIVFKMSKGLINKEIKIHICNKCSTSGAKEPINLADGIEQTQECDRGSAVDSSSKEHSADSSEEKLHVCPECGKSFTRSLALKKHYCMQEKTYVCEVCGKQFTQSRNLLVHSRSHTGERPFTCNICNRGFSYSGDLKIHIRIHTGEKPHVCEVCNKAFSKQGKLKIHYRIHTGEKPYVCKVCKKGFSESQVLKRHYHTHTGEKPHECPVCKKGFTKPGKLKIHYRIHTGENPYICTVCEKRFNDTQVLKEHYRTHTGEKPYVCSICMKCFAFSKSLKKHSHIHTGHPITRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -