Csec007388.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:478686-491446[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0032 0.09 12.8 1.5 1 23 104 126 104 126 0.96 2 10 0.003 0.086 12.9 2.3 1 23 132 154 132 154 0.94 3 10 8.8e-06 0.00025 20.8 1.6 1 23 160 182 160 182 0.98 4 10 0.00024 0.0068 16.3 3.9 1 23 188 210 188 210 0.99 5 10 8.1e-06 0.00023 20.9 0.2 3 23 218 238 217 238 0.98 6 10 7.2e-05 0.0021 17.9 3.1 1 23 244 266 244 266 0.97 7 10 8.6e-05 0.0024 17.7 2.2 1 23 272 294 272 294 0.97 8 10 1.4e-05 0.0004 20.2 2.3 1 23 300 322 300 322 0.96 9 10 0.0003 0.0085 16.0 4.5 1 23 328 350 328 350 0.95 10 10 0.014 0.39 10.8 6.9 1 23 356 378 356 378 0.97
Sequence Information
- Coding Sequence
- ATGGAGGCAGAGGAACTcactgccccagatgatatatgTCATGAGAATATGGTCATTGTGTCAGTTAAAGAAAAAGTGAATGGAGAAATTGGCACGCAGAAAGATGGAGAGTGTTCTGACATAACTTCTGGTACTGTAGATACAGAGCAATACATgcaagaatatatggagctgGAAGATATTGAAAGAAATCGTGTAATGGAGACTACCAGTCAGCAAGGTGATGAGAGGGAAGCAACTTTGGCAACTGAGCTAGCTGTGTCATTTGCCCCCTGCATTCAGTCATCATTCCACATAGCTGATAGACCTCATGAGTGCCATGTTTGCAGCAGAAAGTTTGCACTGATTGATGACCTTGAGAAGCATTCCTTAATACACACAAGAGGACAGCCACATGAATGCCTTTTATGTAATAAGAAATTTACACGAATAACTGGCCTCAAGacacactcactcttacacgcCGGTGAACGACCACATAAATGTAGTGAGTGTAATAAAAAGTTTGTACTAGTCTCTGATCTGAAGAGGCATATCTTGATACATAGTGGTGAACGTCCTTATAAGTGCACTATATGTATTAAGAAATTTACACGAATAACTCACCTCAAGAAACATGCTCTAACGCATACTGGGGAACGTCCTCACGGATGTGGTGTTTGTGGAAAAAGATTTACGTTTCCTAGTGATTTGAGAACACACACACTGATTCATACAGGAGAAAGGCCACACGAATGTACACAATGCAATAAGAAATTTAGAAATCTGAATGTTCTTAAGAGACATTTATTGATACATACAGGACAGCGGCCTCATGAATGTACCATGTGTGAACGGAAGTTTAGAGATTTAACTGACCTCAAGCAACATACACTTATTCACACAGGGCAACAGCCTCATGAGTGCCAAGTATGTGGTAAGAAATTCACGCGGATGACAGATCTCAGGAAACattcgctaattcacacaagAGAACGACCTCACCACTGCACTATATGTAACAAGAAGTTCATCCGTATGTCTGACCTGAAGACTCATTCACTTATACACACAGGAGAACGTCCCCATGagtgtaatgtgtgttgtaAAAAATTTACTCGAATAAGTCACCTCAAGGAACATACCCTAATACATACCAGGGAGAAAAATCATGACCATAAAATTGTTAAAGGTGTACGTTGA
- Protein Sequence
- MEAEELTAPDDICHENMVIVSVKEKVNGEIGTQKDGECSDITSGTVDTEQYMQEYMELEDIERNRVMETTSQQGDEREATLATELAVSFAPCIQSSFHIADRPHECHVCSRKFALIDDLEKHSLIHTRGQPHECLLCNKKFTRITGLKTHSLLHAGERPHKCSECNKKFVLVSDLKRHILIHSGERPYKCTICIKKFTRITHLKKHALTHTGERPHGCGVCGKRFTFPSDLRTHTLIHTGERPHECTQCNKKFRNLNVLKRHLLIHTGQRPHECTMCERKFRDLTDLKQHTLIHTGQQPHECQVCGKKFTRMTDLRKHSLIHTRERPHHCTICNKKFIRMSDLKTHSLIHTGERPHECNVCCKKFTRISHLKEHTLIHTREKNHDHKIVKGVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -