Csec004270.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- HINFP
- Assembly
- GCA_002891405.2
- Location
- NW:1292-50177[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.18 5 7.3 0.6 2 23 213 236 212 236 0.94 2 17 2.8 81 3.5 0.1 1 23 252 276 252 276 0.93 3 17 0.1 2.9 8.0 2.4 1 23 315 339 315 339 0.89 4 17 0.0048 0.14 12.2 4.1 2 23 428 450 427 450 0.96 5 17 0.074 2.1 8.5 4.8 1 23 456 478 456 478 0.99 6 17 0.25 7.2 6.8 4.3 1 19 484 504 484 509 0.93 7 17 0.031 0.89 9.7 5.3 1 23 517 540 517 540 0.97 8 17 9.5e-05 0.0027 17.6 1.6 1 21 918 938 918 939 0.95 9 17 3.5e-06 0.0001 22.1 2.8 2 23 947 968 946 968 0.96 10 17 3e-06 8.6e-05 22.3 2.1 1 23 974 996 974 996 0.98 11 17 0.00042 0.012 15.6 3.4 1 23 1002 1024 1002 1024 0.98 12 17 0.024 0.68 10.0 5.2 2 23 1031 1052 1030 1052 0.97 13 17 0.00075 0.021 14.8 0.5 1 23 1058 1080 1058 1080 0.98 14 17 0.0042 0.12 12.4 6.3 1 23 1086 1109 1086 1109 0.96 15 17 6.5e-05 0.0019 18.1 1.6 1 23 1115 1137 1115 1137 0.98 16 17 0.0015 0.043 13.8 0.4 1 23 1143 1165 1143 1165 0.97 17 17 0.00022 0.0063 16.4 4.6 1 23 1171 1193 1171 1193 0.98
Sequence Information
- Coding Sequence
- GAGAATGCTGTTTCCATCAAAGTAGAAATTGATGATGTGATTGAAGAAAATTCAATCGACATGGAAACTGATGAGGTTTATAGACCATCAGTATGTTCCATAAACAAGGTTGAACCCAAGGGGAACAGTGTTGCTGTCAAAGTAGAAGTTGATGATGTAATCGAAGAAAATTCCGTTGATGTGAAAATTGAGGAGGTTTTTGCACCATCAGCATGTTCCATAATGGAGGTTGAACCCAAGATCTGTACTATCTTATTGAAAGATGGACCTTGTCCATCCAGTGAGACATGTAATTgggccatgaatgtaaaagttGAAGAGGACGATCCTTTGGCGATACCATTTGCTTcagtaaaggctgaacctggGGTCTGCAAAGGCAGCAAGATGTCCAGCATGTCACCATCTGATGAAGGCCCGGAAGGTGATGGTCTGGCACACTGTGCTGACTATGTGGACAGTCAGTCATCTGACATTGTCATGAAGAATGAGGTCTGTAGGAAGGAGGCACCAGTATATGAAAAGCATTGTGACTCCACAGATGCAAGTGATGATTCAGCTAGTGTTGCACCATCTGCTTGTGAAAAGAAGCGTAAGGCCAGGGCGATAAAGCTGAAAGAAGAGCGGCTAGATCTGCAGTGTGAGTGGCGGGACTGTGATTACCGCACTGGCAATCTTGACCACTTTGTGCGTCACGTGAGCCTCCACATACCACACCTAGAGGTGAAAATGACTGATGATCAGGAAGGTGTATATGTCTGCCTGTGGGAGCAGTGTGGTTTTGAATCTGCAGACTCCAATGAGATAACAAGGCACGTCAATTTCCATTCATACCATACCAAAATAAAATGCATTGGGTCAAATATTTTGGCTCGTTCAAAACTACCGGTTTGTACATTCCAAGATGCTGGGAAGAATGTGGTACCAGACTTGCCACATGCATTTGAATGCTGCTGGCAGACCTGCGAGCAGACATTCAGCAACTCTCAGACTTACTTCAAACATGTTGAGGCACATGTCTATTGCAACCCGCGTGGTAGAATAGTGGAAGGTGGTGTTCCTTGCCATTGGCGTGGTTGCATGTCCAACCCTATGTACCAGTCCATATACAAACTGGCAGAACATGTTAGAAGCCATACTCAGGAGAAACTTGTGGGATGTCCAACATGTGGTGGGCTCTTTGCAAACAGAACAAAGTTCTCATACCACTGTATGCATCAGGTTCCCTCAGAATTGCGAAGGAAGCAGTATCCGTCTAAGAAAGTGGTACAGTACCATGTCAAATGCCCCTTCTGTAACAAGTCTTGCTCTTGTCCATCAAACCTTAGTGTGCACATTCGGTATAGACACTTGGATAGCAAGCCATTCAAGTGCAGCTCTTGTGAATATAGAGCCAAGACACACCATGATCTGAAGGTGCACTGGAATACACACCGCTCTGACCCACTTTACCGCTGTAAGGAGGAGGGGTGTGATTTCTCGTGTCGCAGTGCCTATGGACTTCGCAGGCATTGTGACAGGTGCCATGCTGGATGTGATCAGCCACAGTACTGCTGCCACATATGTGACAGCCTGTTCCAACGTGGATCTCTGCTGACACGTCACCTCCGTAAGCGACACAGCATCTGCCGGCCATCAGGGCAGTGCAGATTTAGGTACAAGCAGGCTGAGGATGGCTTGTTCCGTCTTCTGACAACAGGCACTGAAACCATGAAAGTGACTCAGAATATAATGATTTTGGAAGCCAGTCAGCCATTGTGCAGCAGTGAAGATGACCTCCTGACACAGGAGGCAGGAGGGGCAATTTTgtgcgttcagaatggattGGGAAGTCTTGAATTGAAAGCGTtggaggatttcgatgttggaattggAAGCTGTCCCCCATGGCTGAACTGCataggtccatatagAGCCACTTTCTTATGCATCTACCAATCAGTCATGTCTGATGAACACCTTTTAAGGTTAAGAAAGATTATGCAGTCTCTTGCTACAAGAGTGCCAAAAATTATGCTGCAGAGAGTTGAGGAAGTATATCCTCTTCTGAAGGAAAGCTTGCAGAACTTCGATGCCATCAAAGTAGAAAATGATTTTCTGATCAAAGAGAAATCCATTGATATGAAAAGTGAAAAGGTGTGTGCATCAGCATCAAGTTCCATAAAGGAGGCTGAACCCAagGAGAATGCTGTTTCCATCAAAGTAGAAATTGATGATGTGATTGAAGAAAATTCAATCGACATGGAAACTGATGAGGTTTATAGACCATCAGTATGTTCCATAAACAAGGTTGAACCCAAGAAGAACGATGCTCCCATCAAAGTAGAAATTGATGATGTGATTGAAGAAAATTCCATTGACACGGAAAATGATGAGGTTTATACTCCATCAGCATGTTCCATAAACAAGGTCGAACCCAAGCAGAATGATGTTTCCATCAAAGTAGAAACTGATGATGTGATTGAAGAAAATTCTATTGACATGGAAACAGAATTAGCTTGTTCCATAAAGGAGGTTGAACCCAAGATCTGTACTATCTTATTGAAAGATGTACCTGGTTCATCCAGTGAGACATGTAATTGGGTCATCAATGTAAAAGTTGAAGAGGACGATCCTTTGGCGATAGCATTTCCTGcagtaaaggctgaacctggGAATAATCTGAATGAACAACTCATACATGGTGACGAGTCACTTGCTCATCAGACCACACTGAAAGATCGTCAGAGGACACATAGTGGGGCGCATTCATattcttgtgatgtgtgtaacaAGTCATTCAGTAATAAGAAAGTCTTGAAAGTACATCAGTGCATCCCTAGCTCAGGGCTGCCACTTTCCTGTGAAGTGTGTGGAAAATCATTTAGGTTCAAGAGTATGCTGAGGAGACATCAACACGTTCATAGTGAAGAGAGGCCTTTCACTTGTGAcgtatgtaataaatcattcaaaCGGCAGGCAGATTTGCAGATACATCGGCATATACATAGTCGAGAACAGCCCTTTTCTTGTGAAGTGTGTAATAAAACATTTAGTAGAAACTGTATTTTGAAGCTTCATCAACGCATACACACTGGGGAGCGGCCACTTTCCTGTGATGTGTGCCATAAACCGTTTAGATGTCACAGTAGTCTCTGGGTGCATCGACGCGTGCATAGTGAAGAGAGGCCATTttcttgtgatgtatgtaataaaacGTTCAAATGGCAGAGAGATGTGGAGATTCATCAAcgtatacatagtggggagaagccgttctGCTGTGAAGTATGTAATAGGTCATTTAAACTGAAAGCTCATCTGATGATACATCATATGCGCTTACATACTGGGGAGAGGCCGTTTtcatgtgatgtatgtaataaattattCGCCACGAAGTTTGATTTGAAAACTCATAAACGCATCCACACAGGTGAGCGGCCATTTGCATGTGATATCTGTAAAAAGTTATTCAAAGCTCAGAATGAATGGAAGAGTCATTTGCGTGTACATAGCGAGGAGAGACCATTTTCATGTGgtttgtgtaataaatcattcaaaTGTCAAAGTGACCTAAAAAAACATCAAAAGGTACATAGATCGGTTTTCTTGTGA
- Protein Sequence
- ENAVSIKVEIDDVIEENSIDMETDEVYRPSVCSINKVEPKGNSVAVKVEVDDVIEENSVDVKIEEVFAPSACSIMEVEPKICTILLKDGPCPSSETCNWAMNVKVEEDDPLAIPFASVKAEPGVCKGSKMSSMSPSDEGPEGDGLAHCADYVDSQSSDIVMKNEVCRKEAPVYEKHCDSTDASDDSASVAPSACEKKRKARAIKLKEERLDLQCEWRDCDYRTGNLDHFVRHVSLHIPHLEVKMTDDQEGVYVCLWEQCGFESADSNEITRHVNFHSYHTKIKCIGSNILARSKLPVCTFQDAGKNVVPDLPHAFECCWQTCEQTFSNSQTYFKHVEAHVYCNPRGRIVEGGVPCHWRGCMSNPMYQSIYKLAEHVRSHTQEKLVGCPTCGGLFANRTKFSYHCMHQVPSELRRKQYPSKKVVQYHVKCPFCNKSCSCPSNLSVHIRYRHLDSKPFKCSSCEYRAKTHHDLKVHWNTHRSDPLYRCKEEGCDFSCRSAYGLRRHCDRCHAGCDQPQYCCHICDSLFQRGSLLTRHLRKRHSICRPSGQCRFRYKQAEDGLFRLLTTGTETMKVTQNIMILEASQPLCSSEDDLLTQEAGGAILCVQNGLGSLELKALEDFDVGIGSCPPWLNCIGPYRATFLCIYQSVMSDEHLLRLRKIMQSLATRVPKIMLQRVEEVYPLLKESLQNFDAIKVENDFLIKEKSIDMKSEKVCASASSSIKEAEPKENAVSIKVEIDDVIEENSIDMETDEVYRPSVCSINKVEPKKNDAPIKVEIDDVIEENSIDTENDEVYTPSACSINKVEPKQNDVSIKVETDDVIEENSIDMETELACSIKEVEPKICTILLKDVPGSSSETCNWVINVKVEEDDPLAIAFPAVKAEPGNNLNEQLIHGDESLAHQTTLKDRQRTHSGAHSYSCDVCNKSFSNKKVLKVHQCIPSSGLPLSCEVCGKSFRFKSMLRRHQHVHSEERPFTCDVCNKSFKRQADLQIHRHIHSREQPFSCEVCNKTFSRNCILKLHQRIHTGERPLSCDVCHKPFRCHSSLWVHRRVHSEERPFSCDVCNKTFKWQRDVEIHQRIHSGEKPFCCEVCNRSFKLKAHLMIHHMRLHTGERPFSCDVCNKLFATKFDLKTHKRIHTGERPFACDICKKLFKAQNEWKSHLRVHSEERPFSCGLCNKSFKCQSDLKKHQKVHRSVFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -