Csec007780.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:1044745-1058075[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00019 0.0054 16.6 0.1 1 23 511 533 511 533 0.98 2 13 0.0003 0.0086 16.0 1.5 2 23 538 559 537 559 0.97 3 13 0.0022 0.064 13.3 4.9 1 23 565 587 565 587 0.95 4 13 8.1e-05 0.0023 17.8 2.3 1 23 592 614 592 614 0.99 5 13 0.00031 0.0089 16.0 0.1 2 23 621 642 620 642 0.96 6 13 0.00045 0.013 15.4 3.2 1 23 648 670 648 670 0.93 7 13 0.0014 0.04 13.9 3.1 1 20 675 694 675 697 0.95 8 13 0.017 0.48 10.5 1.9 2 21 704 723 703 724 0.93 9 13 0.15 4.2 7.5 0.9 2 23 772 793 771 794 0.94 10 13 1.5e-05 0.00041 20.1 0.3 1 23 802 824 802 824 0.95 11 13 0.00013 0.0037 17.2 1.0 1 19 830 848 830 853 0.93 12 13 3e-05 0.00085 19.2 3.4 1 23 859 881 859 881 0.98 13 13 0.0045 0.13 12.3 0.7 1 23 887 909 887 909 0.97
Sequence Information
- Coding Sequence
- ATGGGGCGGAAAAATAGGCGTTATTGTTGTGTGTTAACATGTAGAAACTACTATAATGTATTACGGGAAGTGTGTTATTCTTTCCCTAGAAAGAAGAAGACGGCACAAGAATGGGTCCGTGCTGTAAATAACCCTAACCTGGTTGTTGAAGAAGCACATATGTACCACAGAAACAAGTGTGTCTGCCACCGTCATTTTGCAACATCCCAGTATAATACTCCTGAAAGGTTGCGCCTCAATCGGGGTGCTGTACCCACACTATTTTTGCCATCATCTGATAGTATTGAAAATGGCCTTTCATCATCACATCTGCAGAAAGTTTTTCTGTCATCATTAAGATACAGTAAGATTGCAGAGTCAGGCGTCCAGGATGAACGTGAGTCTAGAGAGGATGGTGTTAAGGAAGCGACAGGTAACCTTGAAGAGGCTGGAAGTCAATTTGTTTCTCATCTAGACAATGGGTACAGAAATGAAAGGGACTTAGAGCCACTGCATAAGGATCAAGATAGAGTGGAAGTGCCAGTACAGGAAGATACTCAATTGAGACAAGATATTTTGACAGAAAATGATAGAGCACAGCACCATAATTCAAATGGAATGCAAACTAATCACCAGAGTCACTGTAGAGAACCAGAGACACATGTTGGTGGCACTGCAGTGAATGAGAGAGACATAACTGAAACTTGTCACATCACATCTGATCATGGTGACACTGATGAATGCAGAGATGTAAAGTTTATTCCAAACGAACCTTGTACAGTAGCAGTAGATTCATGGGAAAACCTACCAAATCAACTGTGCCGACTCTGTGCGTCTACAGATGAACATCCAAAGCAGTCAATTGTTGGCTGGCTGGGTATGCTAAATGAAATAATTCCAGATTTGGTGGCCCTGAATGACGGACTTCCCCAACACATTTGCAGACCTTGCACAAACAAGCTGTATACATGCAATAAGATAAAGGCAGATTTTGTTGAAGCATATAACAAACTTGAAGAATGTTTGGGATTTACAAAGTCACCAGGAATTCAGTTTGTAGTTACTGCATcagctgattatgatgatcagACATTTGATGAAGTGGCTGAGGAAGAGATGGTGTGTAAGAATGAAGATTTAGTGTCTGAGGTTGAAGAGCAGTTAGCGTCTGAAGTTGAAGAACCGTTAGAGACCGAGGATGAAGTACAGTTAGTGTCTGAAGTTGAAGAACATTTAGTGACTGAGGATGAAGTACAGTTAGTGACTGAGTTCGAAGATCAATTAGTGTCTGAGGCTGAAGGTCCGTTTGAGGTCCCTTCTGAAGACCTTCATAGAGTTACACCAATGTGTGAAAATAACTTTCTTGAGGGCACCGAGATGACTTTAAATGCTGGAGATGATTTATCTGTAAatcctgaagaatttccaatTTCAGCAACTGATGATGGGACAACCCTCCAAGGAAGTTTTCCCCAAGGTGAATCAGAGTGTGTTGCTGACAACTCAGGCATGTGTGACATAATGAAGGGACAGAGAGTGCAAAAGTATAAGTATGTATGTGGTGAGTGTGAGGAAATATTCACAAAAAAGGTAGCCCTGAATGCACATAGACTGTCCCATGCTCCTGTTTCTGAATGTGAATTCTGTAGCAAGAAATTCACTTCTACGTCACAGTTAGATGACCACAGACGCATACATACAAAGGAATTACCTTTCATGTGTGAGGTCTGCGGAAAATGTTTTCGAAACATGACACGATTGAGACACCATGAGTTTGTTCATAAACCACCTAGTTATACTTGTCCAGTGTGTAATAACAAATTTCGTTCTAGAATGTACTTAAGACAGCACAAGAGGGTGCACTCTGCAGACACAAAGCTGATATGTGAGCTGTGTGGAAAAATGCTATATACTGTGTCTAGCCTACAGATTCATTTGCGAATTCATACTGGTGAGAAACCTTTTCAGTGTGATGTGTGtggaaaatgttttatttctgcTGGCAGATTGAAGCATCATGGGTTTAATCATTCAGATAGCAAATTCCAGTGTGACACCTGTGGTAAGGAATTCATTTTCAAGAAGACATTAATACAACACCAGGAATGTCACGTTAAGTTGAAGGAGTGTAGATGCCCTATCTGTTTAAGAGAATTTTCAAATTTACAAAACACAAAAAGACATCGAAAGATAAGTTgtaagaagcctgtttgtattgtCTGCGGTGAAACTTTTCTGACTGATGAGATGGTAGAAGAACATCGGACAAAGGAACACACTGAGGATGAGGTAGCATTTGCAGCAAAAGGTTATAGTAGACAGAAGTATTTTAAAAGTTGTCCAGTTTGTGCCAAATCCATATATTCGGTAAGAGACATGTTGAAGCACATGAAGGAGCATCACAGTGATTATGATTATAAACCATTTGCTTGTGAACTATGTACCAAAACATTTTCTACTGCAAGTGCCTTGCGTACACATAGGATTTGGCATAGCGAACACCGTTCGTTTCCTTGTGTGACTTGTGGTAAGAGGTTTAAGACTAAGTACACACTCAAATGGCATGATTTATCAGTACATAAAAATGAACATCCTTTTCACTGCCCTTTCTGCGACCGCCAGTTTAAAAGACTGTCCGACTTGATTGTGCATAAGAGGAAACACACTGGGGAGAGACCATTCCCATGCCCAATTTGTATGcagaaatttttcacaaaaagtGACATGTTAAAACATGCAATGAAACATTCGCAAAGTAGTGTTAATGTGgcatggaaggaagtggttgagGGAACTGTACCAATAAGTGAAATTGTTTTTCCTTCACAAGACTTGTCATGTGATGTAAATGTGGTGGAATGTGTCGATTGA
- Protein Sequence
- MGRKNRRYCCVLTCRNYYNVLREVCYSFPRKKKTAQEWVRAVNNPNLVVEEAHMYHRNKCVCHRHFATSQYNTPERLRLNRGAVPTLFLPSSDSIENGLSSSHLQKVFLSSLRYSKIAESGVQDERESREDGVKEATGNLEEAGSQFVSHLDNGYRNERDLEPLHKDQDRVEVPVQEDTQLRQDILTENDRAQHHNSNGMQTNHQSHCREPETHVGGTAVNERDITETCHITSDHGDTDECRDVKFIPNEPCTVAVDSWENLPNQLCRLCASTDEHPKQSIVGWLGMLNEIIPDLVALNDGLPQHICRPCTNKLYTCNKIKADFVEAYNKLEECLGFTKSPGIQFVVTASADYDDQTFDEVAEEEMVCKNEDLVSEVEEQLASEVEEPLETEDEVQLVSEVEEHLVTEDEVQLVTEFEDQLVSEAEGPFEVPSEDLHRVTPMCENNFLEGTEMTLNAGDDLSVNPEEFPISATDDGTTLQGSFPQGESECVADNSGMCDIMKGQRVQKYKYVCGECEEIFTKKVALNAHRLSHAPVSECEFCSKKFTSTSQLDDHRRIHTKELPFMCEVCGKCFRNMTRLRHHEFVHKPPSYTCPVCNNKFRSRMYLRQHKRVHSADTKLICELCGKMLYTVSSLQIHLRIHTGEKPFQCDVCGKCFISAGRLKHHGFNHSDSKFQCDTCGKEFIFKKTLIQHQECHVKLKECRCPICLREFSNLQNTKRHRKISCKKPVCIVCGETFLTDEMVEEHRTKEHTEDEVAFAAKGYSRQKYFKSCPVCAKSIYSVRDMLKHMKEHHSDYDYKPFACELCTKTFSTASALRTHRIWHSEHRSFPCVTCGKRFKTKYTLKWHDLSVHKNEHPFHCPFCDRQFKRLSDLIVHKRKHTGERPFPCPICMQKFFTKSDMLKHAMKHSQSSVNVAWKEVVEGTVPISEIVFPSQDLSCDVNVVECVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396353;
- 90% Identity
- iTF_00396353;
- 80% Identity
- iTF_00396353;