Csec008391.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:1090080-1102380[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.19 5.4 7.2 0.4 2 23 243 265 243 269 0.90 2 15 9.7 2.8e+02 1.8 5.0 2 23 272 294 271 294 0.92 3 15 0.00077 0.022 14.7 2.7 1 23 341 363 341 363 0.97 4 15 0.008 0.23 11.5 6.7 2 23 369 390 368 390 0.97 5 15 0.0038 0.11 12.5 0.6 1 21 399 419 399 420 0.96 6 15 0.00015 0.0042 17.0 2.2 1 23 426 448 426 448 0.99 7 15 0.013 0.37 10.9 1.1 5 23 458 476 456 476 0.97 8 15 0.003 0.085 12.9 2.2 2 23 483 504 482 504 0.96 9 15 1e-05 0.00029 20.6 2.3 1 23 512 534 512 534 0.98 10 15 0.0012 0.034 14.1 2.8 1 23 540 562 540 562 0.96 11 15 0.0026 0.073 13.1 1.0 1 23 570 593 570 593 0.94 12 15 0.0044 0.12 12.3 0.4 3 23 613 633 611 633 0.96 13 15 1.1e-05 0.00032 20.5 1.5 1 23 639 661 639 661 0.98 14 15 2.3e-05 0.00065 19.5 0.7 1 23 667 689 667 689 0.96 15 15 0.00076 0.022 14.7 2.0 1 19 695 713 695 717 0.92
Sequence Information
- Coding Sequence
- ATGGCAGTGGATTTGGGAAGTGCATTACCAACTGTTTATGCCACTGTATCTGCTGAAGCCAGTGTCAGTTCCTTCTGTCGAATATGTGCAACCACAGGTTCTCGTCACTTATTCTCAATCTTCAGTCCAGAAGGTGAATTGTGGGATATAGCAGAGAAGATTGGACGTTGTCTACCCATCATTGTACTTCCAACAGATACCTTGCCTTTAAACATCTGTTTCCAATGTTTGATAAAACTGAATACAAGCTATGAGCTGGTGATTATGGCCCTTAACTCTGAAGCTAAACTTAAAGCTAAATTTGATTTCGCTGAAGACCCTTCACTGCAACCAGAGTCTCATGAAGGTGACCGTATAACTGGAGTGTTTGTGAAGCAAGAAGAGCCAGTCACTAAAGTGAAACAAGAGCTATCAAACAGCATAGAGGACTTACCAGCTGCATTTGAATGTGAAGTTGTGATATCTGAGGAAACTGAAAGTAGTGAAAAATTGGAAGTGGATTCTATATTGAAAGAGACTGATACATTTGAGGAGCAAAATAAAATTCCTCAAGATACAAATGAAATTGAAGAACTGAGAGAACATGAAGTACAAAGCTATAACTGCAGAGTAGAGGTTGATATCCAAGGAAATGACATAGAATCACATAAAAGCAATCTAATTGAGGCCAGTGATGTCCAGCTGATGTCTGAGAAAGTACCATCATTGACCATATATGGACCTGCAGTATGTGACCTATGTAATGTGAGATTCACTGATATGGATGAATTTGACAATCATGTTGCAGGGCAGCATCTTAAGAAACATAAGTGGCAATGCCACTGTTGTGATGATAGCTTTGAGCATTCACAAGATCTTGTGCACCATAAGGCAGTGATCCATGGTGAAGAACCAATCTCTTGTGGACATTGCCAAAATAATGAAGTGAAGAATGAAAATAATGCAAAtgaagggactgaagaagaGTGGCTTGATGAAAGTGGAAGTCATACCAACAACAATAATAGAGATAATTTAGAATTTTACTGTGAGCTCTGTGATAGGAATTTCTGTGATGAAACCAAATTGAAGGATCATTACCTGGTTCACTCATCACACTCATTGGTATGCAGTAAATGTGGCCTCAGGTGCAGCTCATCACATGATTTGTGTATTCATAAGAGGAGCCACTTGAGAAATGTTACAGAGAGAAGATACACATGTGAGATCTGTAGGAAGACTTTTGTGGAACGTGTTATGTACATCATTCATCGCCGACACTGTGGCAGCAAGCAGTACACATGTAATTTATGTGACCGCACCTTCTGGCATGAATACAGCCTTCAACTACAtatgaaaGTCCACAACCAAGAGCAGAAAGAATATGAATGTGACTGTGGACAGAAGTTTGATAAGTATAGCATGTTCCAAGCTCACAAGAAGACGCATGAGAAACCAGCTACAATGAAATGTGTCACATGTCAGAAGGTGTTTACAAATGAGACTTTCTACAAGAGGCACAGATACATACATGATCCAGAATATTGGGACCGTTTCAAGTGCCAGACCTGCCAGCGTCCATTCAGAGATGCTCATGCATTGAAGAACCATATGCAACTACACGCTGGCATAAAACCTCATATGTGTGATCTTTGTGGTCGTACGTACAACAGGTTTGCCAATATGCTGAAGCATCGCAAACTTCATAAGCCTCAGAATCTTTGGGAACATAATTGCAATCAGTGTGAGGCAAAATTTGAGCGTTTGAAGGACCTAATGTCTCATATGGAGCAGGCACACATGCTTGGTGGCCCAACGGAAGATGCAGAAGGAAAGAAGTCATCTGTAAAGTGGATATGTCGTTTCTGTGGAAAGCGTATCTCTACAAAGCTTAGTCTTCAGGACCATGAACGTATTCATACCGGTGCCAAACCTTATATTTGTGAATGGTGTGGACGCAAATTCCGTTCCCGTCCAAACCTCTTGCAACATCATCTCACCCACACAGGTGATCGGAAACATGCTTGTGCAGTATGTGGTAAAAAATTTGCACGTAAATCGTTCATTGCTCAGCATATGAGGGTGCATACTGGTGAAAAACCATTTGCATGTGATTTCTGTGGCAAACGTTTCACACAGGCTGGAGATATGAGAAGACATTGTGGTCGCCATATCAAACAACAGAAAGAACCAATAGCATTATTTGTACAAATCCAACAGTAA
- Protein Sequence
- MAVDLGSALPTVYATVSAEASVSSFCRICATTGSRHLFSIFSPEGELWDIAEKIGRCLPIIVLPTDTLPLNICFQCLIKLNTSYELVIMALNSEAKLKAKFDFAEDPSLQPESHEGDRITGVFVKQEEPVTKVKQELSNSIEDLPAAFECEVVISEETESSEKLEVDSILKETDTFEEQNKIPQDTNEIEELREHEVQSYNCRVEVDIQGNDIESHKSNLIEASDVQLMSEKVPSLTIYGPAVCDLCNVRFTDMDEFDNHVAGQHLKKHKWQCHCCDDSFEHSQDLVHHKAVIHGEEPISCGHCQNNEVKNENNANEGTEEEWLDESGSHTNNNNRDNLEFYCELCDRNFCDETKLKDHYLVHSSHSLVCSKCGLRCSSSHDLCIHKRSHLRNVTERRYTCEICRKTFVERVMYIIHRRHCGSKQYTCNLCDRTFWHEYSLQLHMKVHNQEQKEYECDCGQKFDKYSMFQAHKKTHEKPATMKCVTCQKVFTNETFYKRHRYIHDPEYWDRFKCQTCQRPFRDAHALKNHMQLHAGIKPHMCDLCGRTYNRFANMLKHRKLHKPQNLWEHNCNQCEAKFERLKDLMSHMEQAHMLGGPTEDAEGKKSSVKWICRFCGKRISTKLSLQDHERIHTGAKPYICEWCGRKFRSRPNLLQHHLTHTGDRKHACAVCGKKFARKSFIAQHMRVHTGEKPFACDFCGKRFTQAGDMRRHCGRHIKQQKEPIALFVQIQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -