Csec009804.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:848996-866039[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.54 15 5.8 0.6 3 21 6 25 4 26 0.85 2 16 0.25 7 6.8 0.0 2 21 32 51 31 52 0.92 3 16 0.97 28 5.0 0.3 1 12 249 260 249 269 0.83 4 16 0.085 2.4 8.3 1.5 1 21 520 540 520 541 0.93 5 16 0.5 14 5.9 0.1 2 23 549 571 548 571 0.95 6 16 0.00093 0.026 14.5 0.6 2 23 595 616 594 616 0.97 7 16 0.00079 0.023 14.7 3.8 2 23 629 650 628 650 0.97 8 16 0.0048 0.14 12.2 0.7 3 23 685 705 683 705 0.95 9 16 1.2e-06 3.5e-05 23.5 3.4 1 23 773 795 773 795 0.98 10 16 0.0053 0.15 12.1 2.8 3 23 801 823 799 823 0.93 11 16 0.0046 0.13 12.3 1.2 1 23 829 851 829 851 0.98 12 16 0.00056 0.016 15.2 5.5 1 23 857 879 857 879 0.98 13 16 2.1e-05 0.00059 19.7 1.1 1 23 885 907 885 907 0.98 14 16 0.00045 0.013 15.4 0.7 1 23 913 935 913 935 0.98 15 16 7.4e-05 0.0021 17.9 0.3 1 23 939 961 939 961 0.98 16 16 3.2e-05 0.0009 19.1 0.2 1 23 973 995 973 995 0.98
Sequence Information
- Coding Sequence
- ATGGGAACTTTGGTCTGTCCCTTGTGTTGTAATGAAAAATTTTCAAACCAGCTGTCACTCAGATATCATTTGTTGAGTGTCACAGATAATGTGTACTGCCCTGAATGCAGTCAGCGGTTTGATAGCATTCTCCAGCTTGCTGATCATTTGAATGGCATGTGTGGAAAAGCAGAATTTATTAGTGAATCTGAAGGATATATGccaacagaaaatttaattgaagAAGAGAGAGTGGTAGTACATGAAGGCAAGACACATGATCCAGAAGTCACTGAGCTAAGcaattcagaaaatatgaactCTGATTTCCATGAGGAAGAAATGCACCAGGAGATTCCAGTTGCAGCTGACCCCCAGCTGGGTGGTTCAGAATCAGTGTACCTGGTTTCAGGCATAGATGTCCAGCAAAGAGATGTTACTCTTTTCAAGAAAGACTATGTTAATGTCACCGAGCAGAAGTTGCATGTTGCAGTTGATCACAAAAGTTCAAGCAGTGTAATGGAACAGAGATATTCCAATGGCAGTAATGACGTTGTTGAGAAATCTGTCGGGGCTGAAGAGGATTTGCCTGAGAAACTGTCTGATtttgaaacaaatgaatcaaTAATGCTGGATGGTCAGGAATTTGACAGGGTTATACACAGTTTATCATCAGCGGGTGAAGGGATGGGTGATAGTATGGAGTCGCAACATGCTTTATCTGAAATGGAAGATCCTGGTGACGGACAGATGGTCTGCGGCACATACACATGTTCCAGCTGTGGGATCACCTTTAACTCTGTGATGGAACATGTAAGAATGTACCATGGTGGAGAGGAAGTTGTTATTGAGGTACCACAGGCTAAGAAAATTGCCCTTGAGAAGTTGATTAGATCTTCAAAGGAAGTTTTGGGAGCCCATGATGAGCAGATGATGGATATTTTACCTCAGTCTAATGATGTTAATGAGACGGCAGGTCTGGAAGAGAGAACGGGCGCAACAGATTTTGTGTCTGGCTTTTCTGAAATTCAGCAACAGTCATCAGAATTTCATCCAGAAAACCAAACGAATGCTTCAAAtcatgctgctgctgctaatgGTGAAAGTCATGAAAATGTCAAACCATATCCATGGGCTAAGGAGAGGACTCGAGTTGTTGCAgatgaagagaaaataaagCAAATTGTTCCTGACCCGAAACGGGTTATTCCCTCTGTTCATGTAAGAGAAGAACATGTAACTGGTGAGGTGAAATATGTCAGCAAAGAGGTGAAAATTGGCAGATTCTGGGAAACTAAACCTGATACGGATTCAAATAATGAAAGTgctaatacaaataataatattaaagtgcccATATTATCTGTGCCTGGTAGGCTGAAGATGGAAAGTAAGAGGcaacttttcaagaaggacacTAGAACCAGCATTGAGAAATTATTTAGTggtaattttttattaaaaggGTCTGGGGGTCGTGGAACTAGGCCAGGACCCTATCTTGGGGTAAATAGGGTTCCAGAAGTAAAGGTAATTATGAGCCCTGGTGACAAAGGAATAGAAAATGCAATCTCTGTGTTTACATGTAGTACATGTCAGCAAGAATTTGGTAATGTGTCTGCATTCGAAAGACATTCTTGTACCATCGCAAAAATGTGTACCTTGGTCTGTAAGTTGTGTGACGAGGATATAGTTGATATGAAGGAAATGCGTTCGCACATGGAATCAGTTCACAATGTTAAGTCCGAGATGCCGAACATGATGAAAAGGAAGTACAACATGCAGATGTTACCTGCGCCCGTGAAGTGTGAATCGTGCGATATGACGTTCACAACGATAAGAGCTTTGAAGTTGCACAGGAAGGTGCATGAACGGGCAGAACTGAAAGAACTGAAAGTCCCTCTGGAGTGTCCAGTTTGCCATAATATGTGCTCAACCAGTCGAACGTTGAAGCAGCACATGAAAGTGCACGCAAAACCATTGCCTGGGAAGAAAATTGAAGATGGTGCTGGGGCAACCGAAGAGGATGTGAATGCTAAGGCAGAGAAGGGCGAGACACCCAGTTCGCTTGCATGTAAAGTGTGTTGTAAGCCATTCAGCAGTAATGATGAGTTGCGGGTGCATTGGCAGGAACATCTGATTAAAGAGGAAGATGAGgaggatgaagaagaagaaaaactggTAGAGAAGACAGATGATGGGTCAATGGAACCTGCAGTGCCGGAGGAGGATGGTATGCAGAACAAGAAGAACACTGTGCCATGCGCGAGGTGTCACAAGGAGATAGACAAGTGCTGTAAAGAGGAACATATGGCGAAACATTTCTCCCCTCTGAGGTATGATTGTCCAGTTTGCAACAAGACCTTCAGCAAACATGGCCACCTCAACATGCACATGCGAATCCACAGAGGATTCAAAGAATGCTCATGCATCCACTGTGGAAAGATATTTGCAAACATGAATCTTCTGAGGACACACGTTCAGTCTCACATGATCCACCGTCCTTACAAATGTGGTTTCTGTGGACGTGGCTTCTTCCGACCTCATGACAAGGTAGAGCATGAACGTGTTCATACAGGAGAGAAGCCTTATCACTGCTCAGTGTGTGGCATGCAGTTCAGAGTGCGATATTGTCTCACCCTCCACATGAGGCGACACACAGGTATCCGTCCCTACAACTGCAAGGTGTGTGGCAAAACGTTCCGAACTGGCACAGCATTCAAGGCTCACACTAAGATCCATCTGGATGAACGTGCTTACAAGTGTCCCTCCTGCCCGAAGAAGTTCAACACATTGATCCAACTTCTGGGTCACAAGAACAGCCATACGAAGCCCTACTCCTGTGTGGAATGCAACCGGCCATTTTCATCCCTCTATGCTGTTCGGAAGCATATGGAATCTCATGAGGAGgggaacagtggcaaggtgccCCTCAAGTTCCAGTGTGATGTATGTGGGGCATCTTACGCACGCAGGTTTGCTCTCAAGGATCACCTCAAGGTCCATGGTCCTAATATTCCTTCAACAGCAGCTGATAAAAATTGCTCCGATGATTCATCAAGTGACATATCATGA
- Protein Sequence
- MGTLVCPLCCNEKFSNQLSLRYHLLSVTDNVYCPECSQRFDSILQLADHLNGMCGKAEFISESEGYMPTENLIEEERVVVHEGKTHDPEVTELSNSENMNSDFHEEEMHQEIPVAADPQLGGSESVYLVSGIDVQQRDVTLFKKDYVNVTEQKLHVAVDHKSSSSVMEQRYSNGSNDVVEKSVGAEEDLPEKLSDFETNESIMLDGQEFDRVIHSLSSAGEGMGDSMESQHALSEMEDPGDGQMVCGTYTCSSCGITFNSVMEHVRMYHGGEEVVIEVPQAKKIALEKLIRSSKEVLGAHDEQMMDILPQSNDVNETAGLEERTGATDFVSGFSEIQQQSSEFHPENQTNASNHAAAANGESHENVKPYPWAKERTRVVADEEKIKQIVPDPKRVIPSVHVREEHVTGEVKYVSKEVKIGRFWETKPDTDSNNESANTNNNIKVPILSVPGRLKMESKRQLFKKDTRTSIEKLFSGNFLLKGSGGRGTRPGPYLGVNRVPEVKVIMSPGDKGIENAISVFTCSTCQQEFGNVSAFERHSCTIAKMCTLVCKLCDEDIVDMKEMRSHMESVHNVKSEMPNMMKRKYNMQMLPAPVKCESCDMTFTTIRALKLHRKVHERAELKELKVPLECPVCHNMCSTSRTLKQHMKVHAKPLPGKKIEDGAGATEEDVNAKAEKGETPSSLACKVCCKPFSSNDELRVHWQEHLIKEEDEEDEEEEKLVEKTDDGSMEPAVPEEDGMQNKKNTVPCARCHKEIDKCCKEEHMAKHFSPLRYDCPVCNKTFSKHGHLNMHMRIHRGFKECSCIHCGKIFANMNLLRTHVQSHMIHRPYKCGFCGRGFFRPHDKVEHERVHTGEKPYHCSVCGMQFRVRYCLTLHMRRHTGIRPYNCKVCGKTFRTGTAFKAHTKIHLDERAYKCPSCPKKFNTLIQLLGHKNSHTKPYSCVECNRPFSSLYAVRKHMESHEEGNSGKVPLKFQCDVCGASYARRFALKDHLKVHGPNIPSTAADKNCSDDSSSDIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -