Csec009674.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:43069-45919[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.03 0.86 9.7 0.2 2 23 33 54 32 54 0.96 2 13 0.082 2.3 8.3 0.1 1 23 204 227 204 227 0.93 3 13 0.0084 0.24 11.5 1.5 3 23 310 330 308 330 0.94 4 13 4.9e-05 0.0014 18.5 0.5 3 23 340 361 338 361 0.95 5 13 2.3e-05 0.00065 19.5 0.6 2 23 378 400 377 400 0.94 6 13 0.0013 0.037 14.0 0.7 2 23 412 434 411 434 0.94 7 13 0.00078 0.022 14.7 1.3 3 23 442 462 440 462 0.96 8 13 9.5e-05 0.0027 17.6 0.4 1 23 468 490 468 490 0.97 9 13 6.4e-06 0.00018 21.3 0.8 1 23 496 518 496 518 0.97 10 13 0.0041 0.12 12.4 1.2 3 23 526 546 524 546 0.97 11 13 0.00074 0.021 14.8 5.5 1 23 552 574 552 574 0.97 12 13 0.00013 0.0036 17.2 0.7 1 23 578 600 578 600 0.99 13 13 0.021 0.59 10.2 0.4 1 20 604 623 604 625 0.91
Sequence Information
- Coding Sequence
- ATGGTGTGTATAAATTGCCCGCTGTGCTGTAAGCACGAACTTCAGTCCTTTAGCGAACTAAAGGAACATTTAACTCATTATGCTGCCGGTTTCTTGCAATGTCCTCTGTGCGACCATAGTAGTACTGGACTAGAGAAATTAATACTGCATTTAAATGCACACGATATACAATGTGAAGAACATGAGGAAAAGGAGAAAATTTACGCGATTGGAGAAAACTTTGAGAATGATATAATAAAAAATGATGGGCAAGTGGAAATTGCAGCAGAAACCATAAGTTCTTGCAATATTACAGAAGGTGAAATGGTCATTGTGACAGAGTGTGAAGTGGCCAGTGTGATAGAATGCGAAGAGGCAAACATGTTAGAGTGTAATGTGACAAATGTGGAGCATTATAATGAACATCTTCAAAATGATGTTCAGGTGCAGATACAGGAATGTATGGAACAAATGCAGGAGTGTTTAAATAATGCAAACAATTTACATTCAGTTAACCATGTGACAACAGATTATTCCCCAACATTTGCAGTAGATAATGACCAAGAGACAAAAGAAGGCAACATGGAAGTGTCCAGCAAGGCTATGACTAGTGCAAGTGATGAATCACAGTATACCTGTGGAATGTGTGGAATCAATTTAAAAACAATGGATTTTCTTGAAGAACATGCATTAAACGTTCATGGAATAAAATACATTGTTATCGAGGGAAGTAACGGAGATTCATTTGGAAAACATGCAGACAATGCTGTACTTGATTCTTTCAATGGTCAACACATAGAGCTGAGAGAAGGAAGGCCTAAAGAAATCTGTGCTCCAAAATTTTGCCCCAAAACTCGACTTCGTTGGATCCTGCCAAAACCTTTAACCAAAGAAACCAAAGACACTGTCCTCTTTTGCAATAAAGTAAGTGAAACTAATAGAATTGATTGCCATCTGTGCGGCAAGCAGTTTGAGAAGCAGAGCAAGTATGACATTCATAAATATGTGCACCTGGACCGGAAACATTGGCCACTGGCATGCCCTTTGTGCCAGAAACATTTCATCACCAAAAGTGCCTACATTCGACACCTTCTGAGCGTGCATGAAGTAGATAAGACTCCATCAATTCTAAAAATTATTGCAAAGTCTGTACCTTGTGGTGTCTGTGGTAAACACTATAAGAATGCTGGCCATCTCAGAAGACACGTCATCGTTCAACATGAAGCATCTGGAGAAGCTTCAACAAAAGCCATCAAGTGTGAGCAGTGTGATAAACTGTGTTCGTCCGAAGGAGAGCTCCAGCGACATGTGGATCGCATCCACCTGAAGGTACGCCGATGTCTGTGCACTGTGTGTGGAAAGAAGTTCTTTGATGGTAGTGCTCTCAAGGCCCATTCAAAAATCCACTGGGAAGTCAAGCCTTACCCTTGTGGATACTGCGATAAACGATTTGCAGACACATTTGAAGTGAAGCGTCATGAGAGGGGACACACAGGTGAGAAACCCCATGTGTGTGAGATATGTGGAAAGGCATTCCGTCAGGGCTACTTCCTGAATGTCCATTTGCGTAGCCATACAGGTGAGAAACCGTATGGTTGTAACATCTGTGGAGCGGCATTCACATGCAAGTCAACGCTGCGAAATCATAAGCTCATTCATGTGGATGTGAAGACATTCGACTGTACTCACTGCCATAAGTTATTCAGAACATCTGTACAGCTTTACAACCATGTGAGACTTCATACACGTCCTTTCAAGTGTGAAGTCTGTTCCAAGGGCTTCAGCTCACGCGTTATCCTAAGCAGACATGTGCGGACACATGAGAAGAACTACAAGTGCCAAAAATGTGGTACTGAATTCACTGCTTTGCTTAAACTCAGTAAGCATGAGAAAGAATGTTGTGTTCTTGTAAGTAACATTACATATGATCTGTCCCTTTCTGGGTAA
- Protein Sequence
- MVCINCPLCCKHELQSFSELKEHLTHYAAGFLQCPLCDHSSTGLEKLILHLNAHDIQCEEHEEKEKIYAIGENFENDIIKNDGQVEIAAETISSCNITEGEMVIVTECEVASVIECEEANMLECNVTNVEHYNEHLQNDVQVQIQECMEQMQECLNNANNLHSVNHVTTDYSPTFAVDNDQETKEGNMEVSSKAMTSASDESQYTCGMCGINLKTMDFLEEHALNVHGIKYIVIEGSNGDSFGKHADNAVLDSFNGQHIELREGRPKEICAPKFCPKTRLRWILPKPLTKETKDTVLFCNKVSETNRIDCHLCGKQFEKQSKYDIHKYVHLDRKHWPLACPLCQKHFITKSAYIRHLLSVHEVDKTPSILKIIAKSVPCGVCGKHYKNAGHLRRHVIVQHEASGEASTKAIKCEQCDKLCSSEGELQRHVDRIHLKVRRCLCTVCGKKFFDGSALKAHSKIHWEVKPYPCGYCDKRFADTFEVKRHERGHTGEKPHVCEICGKAFRQGYFLNVHLRSHTGEKPYGCNICGAAFTCKSTLRNHKLIHVDVKTFDCTHCHKLFRTSVQLYNHVRLHTRPFKCEVCSKGFSSRVILSRHVRTHEKNYKCQKCGTEFTALLKLSKHEKECCVLVSNITYDLSLSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -