Csec011405.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:429462-467273[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 8.2 2.3e+02 2.0 0.1 1 23 251 274 251 274 0.79 2 22 9.4 2.7e+02 1.8 2.5 3 23 279 300 277 300 0.94 3 22 0.65 18 5.5 0.1 2 23 304 326 303 326 0.94 4 22 6.9 2e+02 2.3 0.2 3 23 331 352 330 352 0.91 5 22 3.7 1.1e+02 3.1 0.3 1 13 385 397 385 401 0.82 6 22 0.046 1.3 9.1 1.8 3 23 525 546 524 546 0.95 7 22 0.69 20 5.4 0.0 8 23 560 576 559 576 0.92 8 22 0.012 0.33 11.0 0.2 1 23 1028 1053 1028 1053 0.93 9 22 0.16 4.7 7.4 2.0 1 23 1068 1091 1068 1091 0.96 10 22 0.11 3.1 7.9 6.1 1 23 1137 1160 1137 1160 0.96 11 22 0.22 6.4 7.0 0.5 1 23 1171 1194 1171 1194 0.94 12 22 0.033 0.93 9.6 6.5 1 23 1200 1223 1200 1223 0.96 13 22 0.0035 0.099 12.7 1.9 1 23 1260 1283 1260 1283 0.97 14 22 0.0036 0.1 12.6 0.7 1 23 1289 1311 1289 1311 0.96 15 22 1.3e-05 0.00036 20.3 0.9 2 23 1318 1339 1317 1339 0.97 16 22 1.7e-07 4.7e-06 26.2 2.5 1 23 1344 1366 1344 1366 0.98 17 22 0.0017 0.049 13.6 4.7 1 23 1372 1394 1372 1394 0.99 18 22 3.9e-05 0.0011 18.8 4.8 2 23 1401 1422 1400 1422 0.96 19 22 0.00021 0.0059 16.5 0.4 3 23 1430 1450 1428 1450 0.94 20 22 0.00052 0.015 15.2 0.2 3 23 1458 1479 1457 1479 0.95 21 22 1.8e-07 5e-06 26.2 0.2 1 23 1485 1507 1485 1507 0.99 22 22 0.0045 0.13 12.3 0.6 2 23 1514 1536 1513 1536 0.93
Sequence Information
- Coding Sequence
- ATGAGTCACAATGAGGAGGGGAGTGATAGAACAAATTTGGAACGGACAAGTTTTCCTTTGTTTCGTCCAAAGAAGAGTAAAGTATCATCAAAGACTTCAAGAGATAGTAGTGGATTATCTAACTGGGGAAAGAGATCAAATGAGGACTATGCAACAAATGTTGAACAGTTTGATGATAATGCAGAGGATAGCGGTCAAGAGGAGTTGACTGCAGGAGGAATGAGGAGGTCTAGTAGTGGTAGTGAAGATGGTGATAGGAACTCTGAGAGCAACAAGGATTTCTCTTCTGGTATTGCATCCACTGGTGAAATGCCAGGTGGACTGAACCCATACATTATGAATCCACTCCTTGCAATGGGTCTCCAGTTACCTCAGTTGGCTGTCCTGatgcagcaacaacagcaacaacagcagcatcAGCAACAACAACTTCAGAACCCATCCAATATTAACCTTCCATCATCCTCCTCACTTTTAAATCCATTAATGATTCCCCACCTCCTGTCATCCAGCCCAACCCCAGGTGTAATGTTACCACTGGACCAACAGGGGCATACACAAAAACACTGGTTGTATGGAACTTCTGCTTCAGAGGTGGAAAAGCCATTAATGCTAGATGAAATGCAGAAGGGAACAATCATGGGTAGCACAGCCAGCATGCGTAGTATGCCTCGGGTAATGAAAGGATCTAAGGAGCCGCTTTCGTCACAGAGAGAGGATTCTGGCACTTCAACATCCGGCAAACAACCATTTATATGTGAGATATGTAATGATTGGTTTTTTTCTCGTGAGAAATTAGTCATTCATTTAGTGATGAATCATTCAATGCAGCATTGCCATTTTTGTTCTCAACTGTTTGAATCGGAGAGTGTGCTAGTGGAACATGAAAGGCAGTCACATCTTCCACTGGAATGTGACATGTGTAAATCATCTGTTCCGACGTCACAAGACTTGGCTGAGCATTATGAGAGTGAACATGATGTTAGAACATGCATATATTGTGGTGTCCTTGTGAGACCTAAATCATATTATGAGGTCCATGTACGTCGAAAACATTTTGTTAGCTGTGGAGATTCTCTGCAGCAAGACGTTGGGGAAAGAGTTCAGATTGTTGATAAATGGAATGGGCAGGAAGGAAACTCTATCTGGACTTTCGTCTGTAAACTTTGtggtaaagaaagaaagaggctGGAAACTTTTGGTCATTTCTTTTCCTATCACCGTCTGTCGTTGGCCTGTCTTATCCAGCTTCTTGCATCAGAAGGAATTGTTTTTTCGGTTCAGGGAACTCCAGCACCTGGATCGTCAAATGTACAAAACTCAACCCAGCAGCAATCATTGGATTCTGTGGCCTCAGCAGCGGATGTTACTTCCAATGTAGATGCCTCTCAAACCTCAGGGATCTCTGCAGGCAGTGAAGAATCACATCAACTTAAAGAAAATCGCCGTGGTTCGAATTCACCTTCACTAACAACCCCAAGTCGTTGCACCGTGTGTACAAATCCATACTCTGTCCAAGTGCCAAAGCTCGCTCACGATCTCTTCTGTCGCCATAATACTGGCCTGGCCCTTTGCAAGTTCTGTGACCGGACATTTAATAGTAAAACATCACGGAACTCCCATGTTGCAAGGGAACATGGGAGTCTTCCATGCCTTGTTGCAGAATGTTTAACTGATATGGTGTTCACTCAGGAATCTCAGCTTTCTGCTCATTATTTGACAGACCACAGTGTGCGTGTGTGTAGTTACTGCAGAGCACTTGTGTCAACTTGGGAAGCCAAGTTTGTGGCTCATCTTAAGTTGGAACATGCATGTTCTAACTCGGGTCATGCCATTCGAAATATGGATACCAATCTCTCGGGGACCGATCTCTTCCACATTCAGACCTACAACACTTCTGTCTCTGTTATATGCTCACTTTGTGATGCAGATATTACCTCACTGATGAAAGACATAATCTCCTTTTTCAAACACCTTCAGCATCATAAAGTTACCCTGCGTTTGGCACTGATACTATTAGAAACACACCCCCCATGTGATAGCATAGAGAGTCCCGTGGTTTTGAAGGAAAAGACCAAACAAAATGAAGGTTCAGAGCAAAATGTTGCAAATCAGGACATCAGCAAGGGTTCAATGTGGGATGCCATTCCAGCTGCATCGGAGCTAGCAGATGTTAATGTTAAAGGGAGTGAAACAATAGCATGCTTCAGCAGTAAGGATGAAAGTCAGGGAAGTAGAGCAAGAAACAGCAATCAGAAGTCAAATTCTGCTAAAGAAAAGAAGGGTGATGGTGTAGCAGAAGGGAAGAAAAAAACAGATTCATCTGCTATAGAGAATTCAAAGACAAAAAATGGAAATGCACTGGAAAATAGTGGAGGGGACGGAAAAAAGACTGATGGAGATGCGACTGATGATGTCAACTTTGATTCATCGAGTGAAATGAGCTCTGAAGAGGAGTACATGGCATCTGAGGTTGGTGAAAATGAAGATTTGAcggaagatgatgatgatgaagaatataCTGTCAAAGAAACAAAGGTAACAGAGAAGTCAAAGAAAAATACTGCACTTCCAGTAACTGAGATGGGCGAGGCTGATATTGACCCAACAGAGGTGGAATGTATCCTCACAGATTCCAGCGATGATGATGGGGACTGTGACAACTTTAATGATGAAGATGATCTTGTGGGTGTGGAAGCTGACAGTGATGAACCAAGTACCATATTTTCATCAAGCAAGATAAAGGAAGAATCCGATAGCAAAGAAATTAGAAGCAGCAGAGACCAAAGAGATGGTAACTTGGAGAATGTTGATATACTTGAACGGTCCATGCAAGAGCTGTTTCGAGATGATACCTCACAGGATGTGGAATTGGATATAAACAAGACCAGTGGCAGAGTAAAGCATGAACCTCAAGAGGAAAGTGGTAGCCAAAGTAATGGGAATAAATCAGAAAGAAAAGGAATAGAGTGTGAAATTTGTCATGGGAAATTCTCGATGAAGGAAGGTCCAAGGCAGTTGTTGGATCACCTGAATTCCCTTCATGGTTTTGCAATATCTGCTTACTGTGCACCAAAAGAGTTTGTTTGCAGTATGAGAGGATGCCGAGAGGTTTTCAGCACTCAAGGATCACTAAGTTACCATTTAAGTGAGGTACATCAGCAAGAACAGAAGATCATTGATGCTGAATCTTTTAAGATCTTCCAGTGCCCATACTGTGCTACCCATTCTACATCAAAGGTAGCCATGCGCCAGCATGTGTTTACCTACCACAGAGAAAATTACCTATCTGAGAATCCTATTGAAGacttggctcacagatgtcgtTATTGTGCTAGGCTGTTCTGGCGCACAGAGGATCGTGACGATCATCAGGTTGATGTTCACAAGGACAAGATGGACAGCTTCTTCAAGTGTTACATCTGTTCCCATCTCTTCTCTAGCAAGGTATGTTTGAATCGTCATGTGAAGCAGTCCCATGTTGATCGAACCATCTTCAGATCAGTGTCATATAAGTGCAAGATGTGTCTTCTTACTTTCCCAAGTATAGCGCTAATGAGAGACCACTTCCGAGACTCACATCCCACTGCCTTGGTTTTCCATTGCCTGCATTGCAACACCACGCTTAAGACCAAGAAGACTCTTAAAACACATATTAAGaATGTGCACTCAGAAGCCCGCCGGCGAGACTGTACTCTTTGTGGGAAAGTATTGTGGAGTAAACGCGCACATGCCATCCACTTTCGCATGAAGCACAGTGCAGCATCCAAAGTTGGCTTCCGCTGCCGCATCTGTCAAAAGAGATTTGACTCTAAGGATGAGAGGAAGCTGCATTATCAAGTAGACCATGAAGGGGAGAGTCCATATCATTGTGCAGAATGTGGGAAGGGATTTGCTTCAAAGTCTGGAATGTATGGTCATCGTCAACTACATACAGGATCAGGGGTGTCCAGGTGTCAGTATTGTGGCAAGGAGTTCACGCGTAAGGACAGTTATAATGAACATCTTTTGAttcacaatggaccaagacacAAATGTCCACACTGTCCAAAGGAGTTTGTCCAGAGGTCCAACTTGGTCAGACACATTCGCATTCATACTGGGGAGAAGCCATACAAGTGCCTGTACTGTGAGAAGTGTTTCTCTGATAAGGGAGCATGCAACTCTCATATTCGTGTGCACACTCGTGAGGAGACATGCAGCTGTCCATACTGTGGGCAGACTTTCTCCAAGAAGCAGaaattgAAGTACCACATTCGGAAACATACAGGTGAAGGACTCATCAACTGTGAGATATGCAGCAAGTCATTCACAAACAGCTTTGCCCTAAAGGAGCATCGTGTCATCCATAATCGTCAGACACAGATCCTCTGTCAACAGTGTGGCAAGGGCTTCAATAGTGAGAAGTATCTTCAGCGACATGTTGCCATTGTCCATGAACCATCTCACACTTTCACCTGCCCCATATGTGGAAAGGCATTTTCACAGCAAGCTCGCCTGAAGGCACATCTCATGACTCATACGGGCGTGAAACACATCAAGTGCCTTCTGTGTGAAAAGGCGTACTCTGTTCGTAAATCTCTGCGGCGTCACTTACTTGAGAAGCATGAGATCTCACCAGATCATCCACAATACAAACATTGCTTCTATGCCATGTCTGCTGCTGAGGCTGGCTTACACATTCCAGAAGGAGTTCCTACTAATATTAGCGGAGATCCAACTGAAGATGATGATTCAACAAGTCAGTCCTCAcccaaggaagaagaagagaagcCCCAACAACCAGTAAAGAAGTCTCCAAAGAAAGGTGGGACACCTGGAAGAAGAGCAGGATCCATGAAGCAACCCTCCACATCTGCAGCATTTGAAGATTACTCTAGCATTCCGTCAGGGAAAAGTGAAGTTCAGAAAACTACCCGAACAAAGAAGTCACCTGCTTCAAAGAAAGcttcaaaacaaaatgaagaCAAGACTTTAGCAACTCCAAGTACATCTGGAGAGGGTCGTCATCGGATATTAAAGAAGAACAGACAGAAAACTTCACCTCGGAAGGtaacaaggaaagaaagaggaacAGAGGAATTTGAGGAAGATACAGCTTTAGCTGCTGTTGCGGGTGGTGAGGACAGTAATTCCCTCAGCAGTACTCCAGAAGTAGTAACACCTCAGAGAGGAAGACCACCTCGTAAAAAAAGAGCAAATAGTAATGCTTCCAGAGTAAAGCAAACAAGAACACGAGGATCCCCAGCACGTAAACAGTTTGAGAATAATAAGCCTGCAGAATCACCTTCAAAAGCCAAAAAGTCTCCGTCTTTAACCATCAATGTGGGTACAACTCGGAAAAAACGAAGGGTCGAAGCCATAGTAGAGACCTTACAGAAGTCTACAGGGTCTCCAAGTGGCTGTAGtctgaaagaagaagaagtggaaGGTGCTGAATCAGAGGGCGGAATTGCTGAAGGAGGAGATGCTGCTAGCATTGTTGGTGGCGGTGATGACAATGATCAAGATATCTGTGCTGGTGATGGCAGCAATGATGGAGAAGAAGATAATGGTAACAGCAGTAGTGGTGGAGGCTTTGATGCGGTACCAACATTAGCAAGAATAACACCTTTGATAACACGGAATGTCCCTAAGAAAGGGGCACAGATAATTGGAGATTCTGGACAAAAGAAGTATATACAAAATTTGCAACATTCACCAGCTCAATCTTCAAAATCTTCTCCATTAGAAGATGGTGATGATGAGTGTAGCTAG
- Protein Sequence
- MSHNEEGSDRTNLERTSFPLFRPKKSKVSSKTSRDSSGLSNWGKRSNEDYATNVEQFDDNAEDSGQEELTAGGMRRSSSGSEDGDRNSESNKDFSSGIASTGEMPGGLNPYIMNPLLAMGLQLPQLAVLMQQQQQQQQHQQQQLQNPSNINLPSSSSLLNPLMIPHLLSSSPTPGVMLPLDQQGHTQKHWLYGTSASEVEKPLMLDEMQKGTIMGSTASMRSMPRVMKGSKEPLSSQREDSGTSTSGKQPFICEICNDWFFSREKLVIHLVMNHSMQHCHFCSQLFESESVLVEHERQSHLPLECDMCKSSVPTSQDLAEHYESEHDVRTCIYCGVLVRPKSYYEVHVRRKHFVSCGDSLQQDVGERVQIVDKWNGQEGNSIWTFVCKLCGKERKRLETFGHFFSYHRLSLACLIQLLASEGIVFSVQGTPAPGSSNVQNSTQQQSLDSVASAADVTSNVDASQTSGISAGSEESHQLKENRRGSNSPSLTTPSRCTVCTNPYSVQVPKLAHDLFCRHNTGLALCKFCDRTFNSKTSRNSHVAREHGSLPCLVAECLTDMVFTQESQLSAHYLTDHSVRVCSYCRALVSTWEAKFVAHLKLEHACSNSGHAIRNMDTNLSGTDLFHIQTYNTSVSVICSLCDADITSLMKDIISFFKHLQHHKVTLRLALILLETHPPCDSIESPVVLKEKTKQNEGSEQNVANQDISKGSMWDAIPAASELADVNVKGSETIACFSSKDESQGSRARNSNQKSNSAKEKKGDGVAEGKKKTDSSAIENSKTKNGNALENSGGDGKKTDGDATDDVNFDSSSEMSSEEEYMASEVGENEDLTEDDDDEEYTVKETKVTEKSKKNTALPVTEMGEADIDPTEVECILTDSSDDDGDCDNFNDEDDLVGVEADSDEPSTIFSSSKIKEESDSKEIRSSRDQRDGNLENVDILERSMQELFRDDTSQDVELDINKTSGRVKHEPQEESGSQSNGNKSERKGIECEICHGKFSMKEGPRQLLDHLNSLHGFAISAYCAPKEFVCSMRGCREVFSTQGSLSYHLSEVHQQEQKIIDAESFKIFQCPYCATHSTSKVAMRQHVFTYHRENYLSENPIEDLAHRCRYCARLFWRTEDRDDHQVDVHKDKMDSFFKCYICSHLFSSKVCLNRHVKQSHVDRTIFRSVSYKCKMCLLTFPSIALMRDHFRDSHPTALVFHCLHCNTTLKTKKTLKTHIKNVHSEARRRDCTLCGKVLWSKRAHAIHFRMKHSAASKVGFRCRICQKRFDSKDERKLHYQVDHEGESPYHCAECGKGFASKSGMYGHRQLHTGSGVSRCQYCGKEFTRKDSYNEHLLIHNGPRHKCPHCPKEFVQRSNLVRHIRIHTGEKPYKCLYCEKCFSDKGACNSHIRVHTREETCSCPYCGQTFSKKQKLKYHIRKHTGEGLINCEICSKSFTNSFALKEHRVIHNRQTQILCQQCGKGFNSEKYLQRHVAIVHEPSHTFTCPICGKAFSQQARLKAHLMTHTGVKHIKCLLCEKAYSVRKSLRRHLLEKHEISPDHPQYKHCFYAMSAAEAGLHIPEGVPTNISGDPTEDDDSTSQSSPKEEEEKPQQPVKKSPKKGGTPGRRAGSMKQPSTSAAFEDYSSIPSGKSEVQKTTRTKKSPASKKASKQNEDKTLATPSTSGEGRHRILKKNRQKTSPRKVTRKERGTEEFEEDTALAAVAGGEDSNSLSSTPEVVTPQRGRPPRKKRANSNASRVKQTRTRGSPARKQFENNKPAESPSKAKKSPSLTINVGTTRKKRRVEAIVETLQKSTGSPSGCSLKEEEVEGAESEGGIAEGGDAASIVGGGDDNDQDICAGDGSNDGEEDNGNSSSGGGFDAVPTLARITPLITRNVPKKGAQIIGDSGQKKYIQNLQHSPAQSSKSSPLEDGDDECS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370430;
- 90% Identity
- -
- 80% Identity
- -