Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:506549-510481[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00024 0.0069 16.3 0.4 1 23 80 102 80 102 0.98

2 15 0.00051 0.014 15.3 3.1 1 23 108 130 108 130 0.97

3 15 1.4e-05 0.00039 20.2 0.4 1 23 136 158 136 158 0.96

4 15 0.66 19 5.5 0.2 2 23 165 186 164 186 0.93

5 15 0.016 0.47 10.5 3.0 1 23 192 214 192 214 0.97

6 15 0.0002 0.0057 16.6 1.9 1 23 221 243 221 243 0.97

7 15 1.8e-06 5e-05 23.0 5.4 1 23 249 271 249 271 0.98

8 15 2.5e-05 0.00071 19.4 1.4 1 23 277 299 277 299 0.99

9 15 0.0033 0.093 12.7 5.5 1 23 305 327 305 327 0.97

10 15 4.6 1.3e+02 2.8 1.8 1 20 332 351 332 353 0.85

11 15 0.023 0.67 10.0 0.6 1 21 369 389 369 390 0.91

12 15 0.01 0.29 11.2 0.7 2 22 407 427 406 427 0.92

13 15 0.00075 0.021 14.7 0.2 1 23 443 465 443 465 0.93

14 15 0.0013 0.038 14.0 0.2 1 23 480 502 480 502 0.95

15 15 0.00099 0.028 14.4 1.3 1 21 517 537 517 538 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00024	0.0069	16.3	0.4	1	23	80	102	80	102	0.98
2	15	0.00051	0.014	15.3	3.1	1	23	108	130	108	130	0.97
3	15	1.4e-05	0.00039	20.2	0.4	1	23	136	158	136	158	0.96
4	15	0.66	19	5.5	0.2	2	23	165	186	164	186	0.93
5	15	0.016	0.47	10.5	3.0	1	23	192	214	192	214	0.97
6	15	0.0002	0.0057	16.6	1.9	1	23	221	243	221	243	0.97
7	15	1.8e-06	5e-05	23.0	5.4	1	23	249	271	249	271	0.98
8	15	2.5e-05	0.00071	19.4	1.4	1	23	277	299	277	299	0.99
9	15	0.0033	0.093	12.7	5.5	1	23	305	327	305	327	0.97
10	15	4.6	1.3e+02	2.8	1.8	1	20	332	351	332	353	0.85
11	15	0.023	0.67	10.0	0.6	1	21	369	389	369	390	0.91
12	15	0.01	0.29	11.2	0.7	2	22	407	427	406	427	0.92
13	15	0.00075	0.021	14.7	0.2	1	23	443	465	443	465	0.93
14	15	0.0013	0.038	14.0	0.2	1	23	480	502	480	502	0.95
15	15	0.00099	0.028	14.4	1.3	1	21	517	537	517	538	0.91

Sequence Information

Coding Sequence: atggGTAGTGAAGTAGATGCTGATAGAAAAATAGAATTTTGTTCCAGCCCTTCTTCATTTCCAGATAGAAGcattgatgatgataatttgaCAGAAACAGAATGTGCTGAATCCTACATATTGCCTGAATGTCAAAATGGAAATGGGAAGCCTGGTGATAGTGAGTTGTTTGTGGTTAGTTTGGATCCAATGCAAGTGTTACCTGATGGCAATATGATACAAAGAGAAGGCAGTGTATATCCATGCAAGAAATGTGACAGAACTTTTCCTCTTCAACAGCTGCTTGTCCTCCATGAACGTAACCATTCACGGGAAAGGAAATATAAGTGTGCTAGTTGCAATAAAAAGTTTTACACCAATGGAGATCTACACAAACATGAGACAGTGCATTGGGAGGATAAGCCATTTTCTTGTGTTGCATGTGGGAAATCTTTTGCTCGAAAAAATTTACTCACTCGGCATGAAAATGTGCACAGGGATAAGAAACGAACTTCATGCAGCTATTGTtctaaattatttctttcactGGCTGAGCTAGCTGAACACGAGAAGGGCCACAAGCGGACCAGACGGTTCCAGTGTAGGTTTTGTGAACAGAAGTTTGCTGCAAAACATTCCTTGGCAAAGCACGAGAGTCGTCATCGGGGAAATGATCTGAAGTTCACATGTGACTATTGTCGGGAAATGTTTTCTTCTCATGCGAAACTTTCACGTCATCTGGTTATACATGCAGGCAGTAAACCATTTCCATGCAAGGTGTGCACCAAGACATTTTCTCTGAGCCACCACCTCACCCGACATATGCGTATTCATTTTTCAGAAAAACTATTCAAATGCTCTTACTGCTTAAAATTATTCTCACGCCGAGAATCCTTGGAGATACATGTTCGTAGTCATACAGGGGAGAGGCCATACCCATGCAAAGTGTGTGGTAAGTGCTTTCAGTCCCATACACAACAAATGCGACACTCGAAGATCCACACAGAAAAACCCTTCCTGTGTTTTGTATGCAAGAAAGCATTTTTAACAGAAAGTGAACAGGAGAAGCATTCCTGCACTTTCAGATCAGGTAATACTAAAACAGCGACATCCTTGGGAAAGCTGTTTCTTTGTACCATGTGTAAGAATCCCTTTGCTACGAAACCAGAACTCGAGGCACATACTTGCAAGATTACGAAACCTTCTGTTCAAACAGATGTATGTGATGATAAACCTTTCCTTTGTGCTTCTTGCAAGGAAACTTTTGTGTCTGAATCTGATTTTGAGAATCATATTTGTACTCCTAAATCTGTTACTTTGGTTTCGCTATCACAGGTGCACAAACCTTTTCTCTGTTCTGACTGTAAGGAATCATTTGCTACAAAAATTGAACTTGAAATGCATTCTTCAGTTCATAAGTCAGTTGTTGTCGTGGCAGTTGTAAACTCAAACAGGCCTTTTCTGTGTGCTGATTGTAAGGAAGACTTTGCTTCAAAGGCTGACCTTGAGGAACACACTTTCACTCATAAGTCTGTTGCTATGATGACAATGGTGGACACTGATAAGCCCTTTCTTTGTGCTAAATGTAAGAAAACATTTGCAACAAAACCAGAGCTTAATGCACACACATGTAATTCTAAATTTAGTTGTAAAGAATAA
Protein Sequence: MGSEVDADRKIEFCSSPSSFPDRSIDDDNLTETECAESYILPECQNGNGKPGDSELFVVSLDPMQVLPDGNMIQREGSVYPCKKCDRTFPLQQLLVLHERNHSRERKYKCASCNKKFYTNGDLHKHETVHWEDKPFSCVACGKSFARKNLLTRHENVHRDKKRTSCSYCSKLFLSLAELAEHEKGHKRTRRFQCRFCEQKFAAKHSLAKHESRHRGNDLKFTCDYCREMFSSHAKLSRHLVIHAGSKPFPCKVCTKTFSLSHHLTRHMRIHFSEKLFKCSYCLKLFSRRESLEIHVRSHTGERPYPCKVCGKCFQSHTQQMRHSKIHTEKPFLCFVCKKAFLTESEQEKHSCTFRSGNTKTATSLGKLFLCTMCKNPFATKPELEAHTCKITKPSVQTDVCDDKPFLCASCKETFVSESDFENHICTPKSVTLVSLSQVHKPFLCSDCKESFATKIELEMHSSVHKSVVVVAVVNSNRPFLCADCKEDFASKADLEEHTFTHKSVAMMTMVDTDKPFLCAKCKKTFATKPELNAHTCNSKFSCKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -