Basic Information

Insect: Cryptotermes secundus
Gene Symbol: ham
Assembly: GCA_002891405.2
Location: NW:716863-983486[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.043 1.2 9.2 0.1 2 23 212 234 211 234 0.95

2 9 0.0031 0.088 12.8 0.2 1 23 241 264 241 264 0.94

3 9 7.5e-09 2.1e-07 30.5 1.3 1 23 270 292 270 293 0.96

4 9 2.5e-06 7.2e-05 22.5 1.7 1 23 299 321 299 321 0.95

5 9 6.3e-05 0.0018 18.1 5.0 1 23 327 349 327 349 0.99

6 9 0.0012 0.035 14.1 0.7 2 21 357 376 356 377 0.95

7 9 1.5e-08 4.2e-07 29.6 1.2 1 23 852 874 852 874 0.99

8 9 7.7e-07 2.2e-05 24.1 1.7 1 23 880 903 880 903 0.97

9 9 2.2e-05 0.00062 19.6 3.4 1 23 909 931 909 931 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.043	1.2	9.2	0.1	2	23	212	234	211	234	0.95
2	9	0.0031	0.088	12.8	0.2	1	23	241	264	241	264	0.94
3	9	7.5e-09	2.1e-07	30.5	1.3	1	23	270	292	270	293	0.96
4	9	2.5e-06	7.2e-05	22.5	1.7	1	23	299	321	299	321	0.95
5	9	6.3e-05	0.0018	18.1	5.0	1	23	327	349	327	349	0.99
6	9	0.0012	0.035	14.1	0.7	2	21	357	376	356	377	0.95
7	9	1.5e-08	4.2e-07	29.6	1.2	1	23	852	874	852	874	0.99
8	9	7.7e-07	2.2e-05	24.1	1.7	1	23	880	903	880	903	0.97
9	9	2.2e-05	0.00062	19.6	3.4	1	23	909	931	909	931	0.99

Sequence Information

Coding Sequence: ATGCTGGGCAGCAGTGACGAAGGCGACCCCACGCCCACGGTAGAGGCCGAGTCCATGGAGGACCCGCTGACAGTGGGACCGCCTTCACgtgactcacagatggctgcaGCAGACGAGGAAGCCTCGCCAATAGTGAGGCTTCGCGCTCATCATGAACTCATGACTACCCATGTCCCACCGGAGCTCGAACTCAGGGAACCTGGTTCCGGTGTGTGGACGAGGCAACATGTGTCCCGGGGAACCCGTTACGGACCCTTCCTCGGAAAATGGACACCGGAGCCACTCGACCCGCGATACGCCTGGGAGGTCAGAGTCGTTGGGAGTGGGATCCGGGGTTTCCTAGACGCGAGCGTCGAGTTCTGTAATTGGTTAAAATACGTCCGTTCTACGAATGAGAGTGAGGCTCAGAATGTACGCACCTTGCTATTGGCTGGCCAGATATTCTATGAAACGACAGCCGAGGTTGGGTCGGGAGAGGAACTGCTACTGGGGCCCCGGGAACCTCTGCAACTCGACATGTTCGGGGAGTCGACCACAACTTCTGAAGACCGCAGCGACAGAGAGACCGAGTCCCAGCATTCGGGGACAGTCGACGACGAGCGGGACGAAGGGGAGGAGGATGCGGAGGACACCCGGTGCGCCCTCTGCAGCAAGGACTTCCCTGATACCGACCAATTGGACGAGCACCTCGTAACGAACCACCGGTACCCGGCCGACCAGTACAAGTGTGAGCTGTGCCCTCGAGCCTTTTCCTGGAGGCCCAGTCTTCAGCGACATCGGGCTCTTAGTCACGAAGAGATCCGAAAGTACCCCTGCGAAAACTGCAGCAAGGTGTTTACGGATCCAAGCAACCTACAGCGCCACATTCGAACGCACCACGTGGGCGCCCGTTCGCACGCTTGTCCCGAGTGTGGCAAGACGTTCGCCACGTCATCAGGGCTCAAGCAACATACACATATCCATTCGAGCGTGAAGCCTTTCCAGTGTGAAGTGTGCTTCAAGGCCTACACGCAGTTCTCGAACCTGTGCCGCCACAAACGCATGCACGCGGACTGCCGCATGCAGATCAAGTGTGTGAAGTGTGGCCAGTCCTTCAGTACTGTCACGTCACTCTCAAAGCACAAAAGATTCTGCGATTCCACTACGACGTCAGGCGGAGGCGGCGCTCATCCTCCATCCCAGCATCACCCTCCCTTACCTCCAAATCCCGCCTCCGCCATGACCCATCTTCCGCATCCACACCCTCAGCCTGGGAACAGCACCAATCCTTTCCTTATGTACTCGCGACCTCCAGCAGGACTTCCTTTTTATCCTTCTCCTCTCATCAGTCCGTACCCTTCAATTTTTCATCATGCTTCCCCCCATCCATCCCATTCATTTCTTAGCAGTCCGTTATTGTTCCCCGCTGGACATCACGCCAAGCTTCTGGATGATGATCATCTATCAAAACACAACACTGGGCTGACCGCAGAGTGCAGTCAGCGCCAGCAGGTCTCTCTTCAGCGTCGTGACGGTAACGGACAAGACCAACAGTTGCTTTCCGAGAGGAATAGTACAGAAAGCTTGAGGAATGGACAGTCCCTCACACCACCTCACATGGCCGCAGGACATAACAAAATTTCGCCACCCTCAGCGGATGAGGCAGCGTCACAACTCCGGCCGTCACCAGCGCGACCCCCCTTGAGTGCAAGTGGAGGTTCTACGTACCCCAATCCCAGAGACTCACTCCCTACAGCCAGTGAACTTCGCATGTctgaagatgatgataatgaacaAGAGTGTTTACCAAGAGATTTGTCTGCAGGGAGTGACACCCGTACACTTTCTCAGGAACCAGAAAAACGTGTTGAACACGAAGAGACAAGACCAGGATCGACAAACAGCGCTGAGAAATCTGAAGGTGAAGAACCACTTGATCTTCGAGTGGAACGTAAAAGAAGACACGACAAAGACGATGACGTGAAAGAACGTGAAGAACACCGTCCATTTGTATGTGCATCTCCTCCTGCGATGCAAAAGGTGAGCGAATCAAAGGAAGGTGTCGCGGGTTCAGAAAAACGGTCGGTCCAATCTCCAGTTAGACAACAGTCTCCACGGGAGCCACGGTCACTCCCACCACCACACCCTCTACCACCACAAGCACCACAAACGAATCACCCGACACGAAGCCCTCTGCCAGAAAAAGTTCCATCTTCGCTTGCGGTCAGCATTTCGCCGACAATGGCCTATCCACGCCCAATTCACCCCATGTTCCTTGAGGCGATGTACCGACCTCCATTCCCAAGCTTCCCACCACCGCCACCGGGTCCAGGTCATCACGACCGTCTTTTGCCCCCGCCACCACCACCGTTTGGAAGATTTCCTTTTCTTGGACCTTTGGTTAATGGTATCAGTAATGGCCACATTGGGAACAGGCCACCGTTTGACCTTCTAAGAGCACCATTGTCTGGTTTCGGTTCCAGTAAACCTTACCAAGATGTCTTAAGTCCACACCTCGGAGCCAACAATGGCGGTGGGGGTGCTGGCAACAGCGGTGGTAAACTGAAGGATCGCTATTCGTGCAAGTTCTGTGGCAAAGTGTTCCCCAGATCCGCCAACCTGACCCGCCATCTACGTACCCACACAGGGGAACAACCGTACAAGTGCAAATACTGTGAGCGGTCTTTCAGCATCTCGTCCAACCTGCAACGCCACGTGCGTAATATCCACAACAAAGAGAAGCCTTTCAAATGCCCTCTGTGCGAGCGATGCTTCGGCCAGCAGACCAACCTGGACCGGCACCTTAAGAAGCATGAGACCGATGACGGCAGTGGCGTGGTTTCAGTGGCGGACAGCCCAGGAAGTAGTAATGAAAACGATCGCGAGGACTCGTGTTTTGATGAAATACGAAGTTTCATGGGGAAAGTGACCAACAGTGGTGCTGGAGATCATCTCAGCAATAACCTTATAAGCCTTCAAACACATCTGTACAGTACTCCTCGTATGTCTTTCCCTCATGTGACTGACGTGGTGCAGAAGGAAGATGAGGACTCAGAAGGTCTATCAGAAGAAGTGGTATCTCCGTCCAGGTACCGAGAAGAGAGGCTGAAGCTTCACCCTTCTGAGGACTCTCCTTTGTCCATGATGGTCAACCAGTCTCCTGTCTCTTATGAAGTgaaagtgaaaactgagaacccAATAAAAGAAGAACCTGCAGCCACCAATAATAACTGCAATGAACAAGAAGCCATACAAGTCTCCACCTAG
Protein Sequence: MLGSSDEGDPTPTVEAESMEDPLTVGPPSRDSQMAAADEEASPIVRLRAHHELMTTHVPPELELREPGSGVWTRQHVSRGTRYGPFLGKWTPEPLDPRYAWEVRVVGSGIRGFLDASVEFCNWLKYVRSTNESEAQNVRTLLLAGQIFYETTAEVGSGEELLLGPREPLQLDMFGESTTTSEDRSDRETESQHSGTVDDERDEGEEDAEDTRCALCSKDFPDTDQLDEHLVTNHRYPADQYKCELCPRAFSWRPSLQRHRALSHEEIRKYPCENCSKVFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTTTSGGGGAHPPSQHHPPLPPNPASAMTHLPHPHPQPGNSTNPFLMYSRPPAGLPFYPSPLISPYPSIFHHASPHPSHSFLSSPLLFPAGHHAKLLDDDHLSKHNTGLTAECSQRQQVSLQRRDGNGQDQQLLSERNSTESLRNGQSLTPPHMAAGHNKISPPSADEAASQLRPSPARPPLSASGGSTYPNPRDSLPTASELRMSEDDDNEQECLPRDLSAGSDTRTLSQEPEKRVEHEETRPGSTNSAEKSEGEEPLDLRVERKRRHDKDDDVKEREEHRPFVCASPPAMQKVSESKEGVAGSEKRSVQSPVRQQSPREPRSLPPPHPLPPQAPQTNHPTRSPLPEKVPSSLAVSISPTMAYPRPIHPMFLEAMYRPPFPSFPPPPPGPGHHDRLLPPPPPPFGRFPFLGPLVNGISNGHIGNRPPFDLLRAPLSGFGSSKPYQDVLSPHLGANNGGGGAGNSGGKLKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHETDDGSGVVSVADSPGSSNENDREDSCFDEIRSFMGKVTNSGAGDHLSNNLISLQTHLYSTPRMSFPHVTDVVQKEDEDSEGLSEEVVSPSRYREERLKLHPSEDSPLSMMVNQSPVSYEVKVKTENPIKEEPAATNNNCNEQEAIQVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00370414;
90% Identity: -
80% Identity: -