Csec002543.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:332704-347622[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0048 0.14 12.2 1.1 2 21 283 302 282 303 0.93 2 15 0.0011 0.032 14.2 3.1 2 21 308 327 307 328 0.93 3 15 0.001 0.029 14.3 0.7 2 23 338 359 337 359 0.96 4 15 0.00071 0.02 14.8 1.6 1 23 372 394 372 394 0.98 5 15 4.6e-06 0.00013 21.7 6.5 1 23 417 439 417 439 0.99 6 15 0.0078 0.22 11.5 1.7 2 23 472 494 471 494 0.94 7 15 0.00046 0.013 15.4 6.5 1 23 500 522 500 522 0.99 8 15 0.0062 0.18 11.9 0.4 2 23 527 549 526 549 0.92 9 15 0.0064 0.18 11.8 4.0 1 23 556 578 556 579 0.94 10 15 0.00018 0.0052 16.7 0.0 2 23 600 621 599 621 0.97 11 15 3.6e-05 0.001 18.9 0.8 2 23 659 680 658 680 0.97 12 15 4.3e-06 0.00012 21.8 0.2 1 23 688 710 688 710 0.98 13 15 0.00082 0.023 14.6 0.2 2 23 774 795 773 795 0.97 14 15 0.35 9.8 6.4 0.3 1 23 821 843 821 843 0.87 15 15 0.0044 0.13 12.3 1.6 1 23 852 875 852 875 0.93
Sequence Information
- Coding Sequence
- ATGGATAACAGGAATGTTATTGTCAAATGGACAAATTGTTGCCGTTTATGTCTTCTTGATGATGGCATTAAATTGCATATATTTGAAGAAGAAGGGATCCAAAGACAAGTTGCACGCAAAATAGAGACATGTTTTCCGATTTTGATATATGTCGGAGATCCACTGCCAAAGATGATCTGTCATAAATGCCTCTATAAATTGGACACAGTGTATGATTTTCGTCTTAGATGTCTTGAAGCCAATACTACTCTGAAGACACAGTTATTGACCCTGACGCATATCACCGAGGTGAAGCAGTATCTGAATACTTTAGAATCGGCTTCATATGTGAGAAAGGAGGCAACAGAGAAGCCATTACACACTGATACTGCATCACCTGTCAGTAGGCAGGTGAAACCACCTGAGCCTGTGATCCCTAGCAGTAAGGTAGCAGTTACAGAAGAAAAAGTGGGGCCTGTACAACTTGACAGCAGTTCAGAAAATGTGTTTCAAGAGGTATTTCTGGCAGACTGCTCAAGTGATGTTTTTTTCCCTGAGCAAAGTCCTGATGAGAATgtgcaaagaaatgaaaatggaaataatttggCCAAACCACTCAGAAGAGAACAGACTGTGTCTGTAGCTCCTGTTGATACGTGTGCATCCTTTCCTGCTGTGAAGATAAAGCAGGAACCCCAGGATGACACCATGAAAGATCATCCTCAAGATGAATTTGGAGAACCCAGGAACCCAGTCAAGTCACAACCATCCCTACCAAGAAATGATGCTCTGCCCCGAGCAGATTTGGAACCTCTGCATGTAAATCTGGAGAAGGTGAAACAGGAGAAGGTGGACACAGCAGACATAGAATGTTCAAAGTGCAAAATCAGGTTCCAAGATAACGGACAACTGCAGAAGCATGTGTGTTCAGTGTCGCAGTGGAGTTGTGAGCACTGCAACAAGTACTTCAAGTCAAAAGATACGCTTTACAAACATAAAAAGTACTTCTGTCCCAAGAAGAAGAACAGCTGTATTTGCAAGGGCTGTGGTAAGCTGTTCAGTTCTTTGATTGAAATGGCACAGCATCAGAAGGTGCATCTCCGAGTCTGTGTCTCTCTTCAAGAGGAGAACCTGTTTACATGTACTGTGTGCAGAAAGAAATTTGCAGCAAGATCCATGTTGGAGATGCACAAGAAATCGCACTCTTCTGTGAACTTTTATATGAACCAAACTGAAGGTGTTTCAGTAGGAAAGGTCCTGGTTAAAAAATTCAAATGTCAGTATTGTCCAAAATGCTATACAAGAAGAGATAAATTAAGAACTCACATGAAATCTCATTTTGTGGGAGAGAAGCCTAACAACATGCCTGAAGGGTCTGTGGAAAGCAAACAGACAAACACTAGTGATGCAGTGCCTCAGTCATCAAAGAAGTGCAGCTGTAAGTACTGTGAATATGTCTGTGATGATTCCGCAGCTTTGTGGCTGCACATGCTACAACAGCATTCTTCTGAAAAGGCATACAAATGCAATAAATGTGGCAGAGGTTTCAGTCACCTGCATGCCTATTCTAATCACAAGAAAACACACAATGCCAAGATACGCTGTAGGGTGTGTGAAAAACCATACTCATCAAGCAAAGCATTGCGAGAGCACGAGTACAGCAAACACAGCATTCAGAAGGCTCCACACCACTGTAGACTGTGCACAGAGAGCTTTGTGACACGGTCAGCACTCCTTATTCATGGCAGGATTCATCACACAAAAGGTAAAAATGATGCCCCTCTGTTGAAAGAAGCAGAGATAAAGGTTGGGACACTTCCATGTAGCCTCTGCAGTGAGCGGTTTCCAAGCCCAGTAACCCTTGTAGCACACATGCAGACTCATATTGGCTTGGGGATGGGGAACAGGGATGTGAGAAATGAGAACATAGGTAATCTGGACCTGGGGTCTCAGCCCCAGAGCAGCCGTGAGAAAGAGGAGGAACATCTGCCTTTGACATGTAAAATTTGCTTCAGACTTTTCAGTAATAAGGGTGGTTTGCAGCGTCATATAAAGATACATGCTACAGGAAAGCATGTGTTCTATCCCTGCAAAGTATGCGGAAAGAAGTTTGTATCACAATCTACGTATGAAGCCCATGCGGCCACACACATGGTCTCAAAATCATTTCATTGCCATCactgtaataaaatattcttcaggGAGGAAGCGTTTAAGTGTCACATATGTGAGAATGCTGAGAAGCAGGCATGCTTGACATGTGGCATTCTGTTGACAGAAGAACAGCACTTGAATCATGTTTGTGAAGGCAGCATTTTGAAGAGTTCAGAGTTGCTGGTGAGGTGCACCGTCTGTCCCGCGGTATTCAGTTCCACAAAGGCACGGAACAATCACATGAGGATCCATGGGAGGCAGCTCATGCTTACATCATCACTCCCAGCAAATTTGAAGAGCATGTTTGTTAAAATGAGCAACGGCTTGTATAAGTGTAACATTTGTAGCAAGTTGACAACAACCCAACAAGGTGCAGCAGGACATTCTAGGTGGCATACTTGTCCGCAGCCACTGAAACAATACCATTGCCCTTTCTGTAACCGCAAATACACTACAGAGACTGGACTTTACACCCACATCACTGCCGAACACCCAGAGATGCCAGGTTAG
- Protein Sequence
- MDNRNVIVKWTNCCRLCLLDDGIKLHIFEEEGIQRQVARKIETCFPILIYVGDPLPKMICHKCLYKLDTVYDFRLRCLEANTTLKTQLLTLTHITEVKQYLNTLESASYVRKEATEKPLHTDTASPVSRQVKPPEPVIPSSKVAVTEEKVGPVQLDSSSENVFQEVFLADCSSDVFFPEQSPDENVQRNENGNNLAKPLRREQTVSVAPVDTCASFPAVKIKQEPQDDTMKDHPQDEFGEPRNPVKSQPSLPRNDALPRADLEPLHVNLEKVKQEKVDTADIECSKCKIRFQDNGQLQKHVCSVSQWSCEHCNKYFKSKDTLYKHKKYFCPKKKNSCICKGCGKLFSSLIEMAQHQKVHLRVCVSLQEENLFTCTVCRKKFAARSMLEMHKKSHSSVNFYMNQTEGVSVGKVLVKKFKCQYCPKCYTRRDKLRTHMKSHFVGEKPNNMPEGSVESKQTNTSDAVPQSSKKCSCKYCEYVCDDSAALWLHMLQQHSSEKAYKCNKCGRGFSHLHAYSNHKKTHNAKIRCRVCEKPYSSSKALREHEYSKHSIQKAPHHCRLCTESFVTRSALLIHGRIHHTKGKNDAPLLKEAEIKVGTLPCSLCSERFPSPVTLVAHMQTHIGLGMGNRDVRNENIGNLDLGSQPQSSREKEEEHLPLTCKICFRLFSNKGGLQRHIKIHATGKHVFYPCKVCGKKFVSQSTYEAHAATHMVSKSFHCHHCNKIFFREEAFKCHICENAEKQACLTCGILLTEEQHLNHVCEGSILKSSELLVRCTVCPAVFSSTKARNNHMRIHGRQLMLTSSLPANLKSMFVKMSNGLYKCNICSKLTTTQQGAAGHSRWHTCPQPLKQYHCPFCNRKYTTETGLYTHITAEHPEMPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -