Csec008228.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- KLF13
- Assembly
- GCA_002891405.2
- Location
- NW:43803-57484[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3e-06 3.7e-05 23.5 2.8 1 23 172 194 172 194 0.98 2 11 0.00014 0.0041 17.0 2.5 1 23 200 222 200 222 0.98 3 11 5.5e-06 0.00016 21.5 6.9 1 23 228 250 228 250 0.99 4 11 3.7e-06 0.00011 22.0 2.6 1 23 256 278 256 278 0.97 5 11 1.5e-05 0.00042 20.1 2.1 1 23 284 306 284 306 0.98 6 11 0.15 4.3 7.5 9.7 1 19 312 330 312 334 0.94 7 11 1.8 50 4.1 0.8 1 10 340 349 340 355 0.85 8 11 2.3e-07 6.6e-06 25.8 0.6 1 23 367 389 367 389 0.98 9 11 1.4e-07 4e-06 26.5 2.9 1 23 395 417 395 417 0.98 10 11 5.1e-07 1.5e-05 24.7 0.7 1 23 423 445 423 445 0.99 11 11 0.00025 0.0071 16.3 6.3 1 23 451 473 451 473 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAGTCAAAGCTGAACCTGGCTCAGACACTGACACTAAACCGATGTTCTTGGCAAGTGACCATCAGTTGCTTGATGTGAATGATGAAGGAGAAATCCCATTTCATGTACTACAGAAAGGAATTAAATGTGTTGCAGATTCAATCAAAGTGGAACCTTGCTCAGATTATGAAACTTGCTCAGTGCTTTCATTCAGTGAAGATAATGAGAAGGAATATCCTATGCCGGTATTTATCCCTGTAATGAAATGTGAAGTGAAGGAAGAGTCAGGAGATGATGATGCCGAAGTCAAGGAAGAGATGAACATTGAAGTGAAAGTACAAAAAAGTGAAATGAGACCAAATGGTGTGGAGTGGATATACAACAAACTGCAGGATGTTTCACCTGAAACTGGTCACCAGCATAATTATGGAAAAAATGCTAGCAGACAGACTGCAATCAAAATTCCTGGAGAAATCAGGCTTAGAAGGCGAAGAAGTAATTCTTATATTCCAATAAAGGTCAAGCGTCACAAGTGTCAGATATGCACTAAAGTGTTTTTTAAAAGTGATTCTCTTCAGGCACATATTCGTACACATACAGGGGAAAAACCTTTCAAATGTGAAATTTGTCATAAGAGGTTTTCAGAAAGGGTGAGCGTCTCAAGGCATCGACTAGTTCACACAGGGGAAAAACCTTACACCTGTGACATTTGTCACAAGAGATTCTCTCAGAGGGCGCATTTGAACGATCATCATCGCATTCATACGGGTGAGAAACCTTATAAATGTGAAACATGCAACAAAGAGTTTTCGCATAACGGAAACCTTGTGAAACATCGGCTTTTACACACAGGAGATAAAACTTACAATTGTGATGTATGTCAAAAAAAATTCATGCGTAGTGACACGCTTAGAAAACATTCCCGTATACATATGGAAGAAAAACCATTCAAATGTGATGAGTGTGACAAGAAATTCACATGTAAATATACGCTCAAAAGACATTGTTTTAACCATTTAGGGGAAAGACCATACTATtgtgatatttgtaataaaGTGATCTCAGGAAATGATTGCATTATACACAGACTTTTACACAAAGGTGAGAAACCTTATCCTTGTAGTGTATGCAATAAAGGGTTTGCACGTAGTTCACATCTTGCTAGGCACCAGCTTATTCATACAGGAGAAAAACTTTACAACTGTGATGTGTGCGGCAAGAAATTCTCTCAGCGGTCACATCTGACTGATCATTATCGTATTCATACAGGAATTAAGCCTTACACTTGTGATATATGCAGTAAAGGTTTCTCACAGAGTGGAAATCTCATGACACACAGACTTACACACTCAATTGAGAAGCCTTACAGTTGTGACTTGTGTAACAAGCAGTTCACACATAAAAATGGCCTCAAAAAGCATTATCATATTCATACAAGAAATATTTAG
- Protein Sequence
- MDEVKAEPGSDTDTKPMFLASDHQLLDVNDEGEIPFHVLQKGIKCVADSIKVEPCSDYETCSVLSFSEDNEKEYPMPVFIPVMKCEVKEESGDDDAEVKEEMNIEVKVQKSEMRPNGVEWIYNKLQDVSPETGHQHNYGKNASRQTAIKIPGEIRLRRRRSNSYIPIKVKRHKCQICTKVFFKSDSLQAHIRTHTGEKPFKCEICHKRFSERVSVSRHRLVHTGEKPYTCDICHKRFSQRAHLNDHHRIHTGEKPYKCETCNKEFSHNGNLVKHRLLHTGDKTYNCDVCQKKFMRSDTLRKHSRIHMEEKPFKCDECDKKFTCKYTLKRHCFNHLGERPYYCDICNKVISGNDCIIHRLLHKGEKPYPCSVCNKGFARSSHLARHQLIHTGEKLYNCDVCGKKFSQRSHLTDHYRIHTGIKPYTCDICSKGFSQSGNLMTHRLTHSIEKPYSCDLCNKQFTHKNGLKKHYHIHTRNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -