Csec001980.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:696831-712890[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0012 0.034 14.1 0.2 6 23 180 197 178 197 0.97 2 10 4.9e-05 0.0014 18.5 6.8 1 23 203 226 203 226 0.96 3 10 1.3e-06 3.7e-05 23.4 4.2 1 23 232 254 232 254 0.97 4 10 1.9e-05 0.00053 19.8 3.7 1 23 260 282 260 282 0.98 5 10 1.6e-05 0.00045 20.0 4.8 1 23 288 310 288 310 0.98 6 10 2e-06 5.6e-05 22.9 4.3 1 23 316 338 316 338 0.97 7 10 6.2e-06 0.00018 21.3 5.1 1 23 344 366 344 366 0.98 8 10 2.9e-05 0.00083 19.2 1.9 1 23 372 394 372 394 0.96 9 10 5.1e-05 0.0014 18.4 7.0 1 23 400 422 400 422 0.99 10 10 1e-07 2.9e-06 26.9 1.5 1 23 428 450 428 450 0.98
Sequence Information
- Coding Sequence
- ATGGTGGTCATCTTGCTCGTTGTGCCTCTACGTGGACAAAGAATGCCAAGAATTGTGCTACAGAGGGCTGCTGTGAGAGAAAGCATGaactgtacaaattcagaggatgttttagtgggtccatatggtgagacatacccaccATGTTATGATGCAAATCAAGccttgaatataaaagctgaggaagtgtcagatgcagaagaggaagaggattcTGTACCAAAAACAATTCaggaaataaaggctgaacctgagAACTATACAAATTCAGAGGATGTTTCAGTGGGTCCATATGATGAGACATACCCAGCTTGTTATGATGCAAATCAGGCCCTAAATATCAAAGCCGAGGAaatctcagatgcagaagaggaagcgGATCCTGTGCCAAAAACAATTCAGGAAATAAAAGCCGAaactgagTACCACCCAAGACACCGGCCAGATCACCAGCACAGCATGCTACACACAGCAAGGGATGGGCAGGGTACTCTGAGAGAACTCCAGCCTGTACATGGTGAGGAGCAGCAATATTCCTGTGATGAATCACTCAGTCAACAGTTTAATCTGAgggcacatcagcgcatacatagtggagaacagccattttgctgtgatgtgtgtaataagtcattcagtcatctgggtgatctgaagaggcatcatcagcgcatacatagtagGGAGTGgtcattttgctgtgatgtgtgcaGTAAGGCATTCAGTCATCAGGGtgatctgaagaggcatcagcgcatacatagtggggagcggccttTTAGCTGCaacgtgtgtaataagtcattcagtgttcAATGTAGTCTGAAGGAACAcaagcgcatacatagtggggaacgGCCATTTAACTGTGacatgtgtaataagtcattcagttgtcaaagtaatctgaagacacatcaacgcatacacagtggggaacggccattttgctgtgatgtgtgtaataagtcatttggtCATCAGGGTGATTTGAAGAGgcaccaacgcatacatagtggggagcagccattttgctgCGATGTGTGTAAGAAGTCTTTCAGTTTGAAGGGCAATttgaagacacatcaacgcaAACATAGTAGGGAGCAGCCATTTAGCTGTAACATGTGTAATAAGTCGTTCAGTGTTGAGAGTAGTCTGAAGGAACATGAGCACATACACAGTGAGGAACGGCCATTTaaatgtgatgtgtgtaataagtcatttaattgtcagagtcatctgaagacacatcagcgcatacatagtggggaacgACCATTTacctgtgatgtatgtaataagtcattcagtgttcagagtaatctgaagaggCATCGGAGCATACATACTTAG
- Protein Sequence
- MVVILLVVPLRGQRMPRIVLQRAAVRESMNCTNSEDVLVGPYGETYPPCYDANQALNIKAEEVSDAEEEEDSVPKTIQEIKAEPENYTNSEDVSVGPYDETYPACYDANQALNIKAEEISDAEEEADPVPKTIQEIKAETEYHPRHRPDHQHSMLHTARDGQGTLRELQPVHGEEQQYSCDESLSQQFNLRAHQRIHSGEQPFCCDVCNKSFSHLGDLKRHHQRIHSREWSFCCDVCSKAFSHQGDLKRHQRIHSGERPFSCNVCNKSFSVQCSLKEHKRIHSGERPFNCDMCNKSFSCQSNLKTHQRIHSGERPFCCDVCNKSFGHQGDLKRHQRIHSGEQPFCCDVCKKSFSLKGNLKTHQRKHSREQPFSCNMCNKSFSVESSLKEHEHIHSEERPFKCDVCNKSFNCQSHLKTHQRIHSGERPFTCDVCNKSFSVQSNLKRHRSIHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -