Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:1144895-1158601[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.2e-06 3.4e-05 23.6 2.5 1 23 193 215 193 215 0.97

2 11 0.00013 0.0037 17.2 6.8 1 23 221 243 221 243 0.98

3 11 6.6e-05 0.0019 18.1 4.8 1 23 249 272 249 272 0.98

4 11 3.1e-06 8.9e-05 22.2 0.4 1 23 295 317 295 317 0.99

5 11 0.00059 0.017 15.1 0.0 1 23 323 345 323 345 0.98

6 11 0.0013 0.038 14.0 7.1 1 23 351 373 351 373 0.97

7 11 3.1e-05 0.00087 19.1 2.8 1 23 379 401 379 401 0.98

8 11 0.00017 0.0048 16.8 1.9 1 20 407 426 407 429 0.92

9 11 2.6e-06 7.3e-05 22.5 1.8 1 23 435 457 435 457 0.98

10 11 2.7e-05 0.00077 19.3 4.9 1 23 463 485 463 485 0.97

11 11 2e-07 5.6e-06 26.0 2.2 1 23 491 513 491 513 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.2e-06	3.4e-05	23.6	2.5	1	23	193	215	193	215	0.97
2	11	0.00013	0.0037	17.2	6.8	1	23	221	243	221	243	0.98
3	11	6.6e-05	0.0019	18.1	4.8	1	23	249	272	249	272	0.98
4	11	3.1e-06	8.9e-05	22.2	0.4	1	23	295	317	295	317	0.99
5	11	0.00059	0.017	15.1	0.0	1	23	323	345	323	345	0.98
6	11	0.0013	0.038	14.0	7.1	1	23	351	373	351	373	0.97
7	11	3.1e-05	0.00087	19.1	2.8	1	23	379	401	379	401	0.98
8	11	0.00017	0.0048	16.8	1.9	1	20	407	426	407	429	0.92
9	11	2.6e-06	7.3e-05	22.5	1.8	1	23	435	457	435	457	0.98
10	11	2.7e-05	0.00077	19.3	4.9	1	23	463	485	463	485	0.97
11	11	2e-07	5.6e-06	26.0	2.2	1	23	491	513	491	513	0.99

Sequence Information

Coding Sequence: ATGGACATCATAAAAGTGGAGCCTGCTTCAGATGAAGAGACACATCCTGTATCTTCACAGAATGCATATTACATGACAGATGGAAAGCAAAATTATCCTGTACATGCAGAATTCTTTGTTGTAAAGAGTGAAACTGAGAACATGTTCATGAAGGAGGAGGAAGGCAGTTCATGCTCTGGGTCACAGCAGATGTCATCTGTGGATGATGGGATCAGCGATATCAAACAGCAGACACTTCTTGTACCTGAGGTCATTCTTGAAGAGCCAGAGGATATGACAACAGTAAAACATGAATTTAAGAATGAAGTACGAGCAGAGAAACCTAAAGTATATGCAGACAGTGGGGAGCATCTGCATAATCTTACTGCTGCCAAAGGCACTGAAACAACAGATGTCAGTGTGTGTATTGACAGTCAGCAGAAAAACATTACAGAAGCTGATGTCAGTCATGTGTATGCAGACACACATAGAGACTTGAGCAGTTCCGTTGTCACAGGAATGAAGGATTTGGAATGTGAAACTAAAAGTAATGGATATTCAGCAAGAAAATATGACCAGAACAAAGGGAAGAAGGTTCATGAATGTGATATCTGTGGGAAATGCTTTTCAACTAGTGGGAACCTAGTAGCACACGCATGCATCCACACAGGAGATAAACCCTTTAGCTGTGAAGTGTGCAGCAAAACATTCAGGCTTCGTCACCACCTCATGACCCACACACGCACCCATACAGGTGATAAGCCTTACAGCTGCAAGATATGCAACAAACGGTTTGGCCACAGTAACTCCCTTGCACATCATGCACGTACGTTTCACCCAGGTGAGCCATTCATCCGTGAAGTATGCAACAGAAGATCAAATCTCACAAAACCTCTTGGGCCTTTCAAGTGTGAGGTATGTGAGAAGTTGTTCCCAAGGCGTGCCAACCTTGTTCGTCACACCCGAATTCACACTGGAGAGAAACGATTCAGCTGCGAGGTCTGTAATAATGCTTATATAGATCGTGCATCTCTTGTAGCACATACTCGTATCCACACTGGTGCGAAACCATTCAGCTGCAATATTTGCAACAAAAGGTTCAATCATCGTAAGTCGCTCTCTGATCATTCCCACACTCACACAGGAGATAAGCCTTTCCGCTGTGACGTATGTAAAAAGCAGTTCACCCAACACGGAAATCTTGTAACTCACTCACGAATTCATACAGGACATAAACCCTTCACTTGTCAAGTTTGTGAGAAAAGTTTTAGGCAACGTGCACATCTTTTGCTCCACACTTGGACACACACAGGAGACAAGCCTTTTAGCTGTGAAGTATGCAAAAAGACGTTTACACAACGTGCAACTCTGCAGGAACATAGTCGAACACATACCGGAATTAAGCCATTCAGCTGTGAAATATGCCACAAAAGTTTCTCTCACCGTAGCACCCTTGTGCAACATACTTATATCCATACTGGAGATAAACCTTACTCTTGTACCATATGCAACAAAAGTTTCAGACAGCGTTCTACACTTGTAGAACACACCCGCACTCACTCGACTGATAAGAATCTGAACTCTAAAATGCTTCACCGTAACTCCCTTGTGGGTCACTATGCACAGTAG
Protein Sequence: MDIIKVEPASDEETHPVSSQNAYYMTDGKQNYPVHAEFFVVKSETENMFMKEEEGSSCSGSQQMSSVDDGISDIKQQTLLVPEVILEEPEDMTTVKHEFKNEVRAEKPKVYADSGEHLHNLTAAKGTETTDVSVCIDSQQKNITEADVSHVYADTHRDLSSSVVTGMKDLECETKSNGYSARKYDQNKGKKVHECDICGKCFSTSGNLVAHACIHTGDKPFSCEVCSKTFRLRHHLMTHTRTHTGDKPYSCKICNKRFGHSNSLAHHARTFHPGEPFIREVCNRRSNLTKPLGPFKCEVCEKLFPRRANLVRHTRIHTGEKRFSCEVCNNAYIDRASLVAHTRIHTGAKPFSCNICNKRFNHRKSLSDHSHTHTGDKPFRCDVCKKQFTQHGNLVTHSRIHTGHKPFTCQVCEKSFRQRAHLLLHTWTHTGDKPFSCEVCKKTFTQRATLQEHSRTHTGIKPFSCEICHKSFSHRSTLVQHTYIHTGDKPYSCTICNKSFRQRSTLVEHTRTHSTDKNLNSKMLHRNSLVGHYAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -