Csec008848.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:337775-368625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0019 0.054 13.5 0.2 1 23 655 678 655 678 0.96 2 19 0.6 17 5.6 2.4 1 21 688 708 688 709 0.89 3 19 0.048 1.4 9.1 1.3 3 23 720 740 718 740 0.86 4 19 0.095 2.7 8.1 0.0 3 23 749 770 747 770 0.89 5 19 0.00031 0.0089 16.0 0.5 1 23 775 797 775 797 0.98 6 19 0.025 0.72 9.9 2.1 1 23 803 825 803 825 0.93 7 19 4.6e-05 0.0013 18.6 3.6 1 23 831 853 831 853 0.99 8 19 0.013 0.36 10.9 0.0 1 23 865 888 865 888 0.90 9 19 0.0055 0.16 12.0 0.2 1 23 907 929 907 929 0.98 10 19 0.034 0.96 9.6 0.5 1 23 936 958 936 958 0.94 11 19 0.0018 0.05 13.6 0.8 1 23 973 996 973 996 0.95 12 19 0.00015 0.0042 17.0 1.0 1 23 1003 1026 1003 1026 0.98 13 19 0.094 2.7 8.1 1.0 2 23 1047 1069 1046 1069 0.94 14 19 8.3e-05 0.0024 17.8 1.7 1 23 1078 1100 1078 1100 0.99 15 19 4.9e-05 0.0014 18.5 2.6 1 23 1106 1128 1106 1128 0.97 16 19 0.03 0.86 9.7 1.9 1 23 1134 1156 1134 1156 0.95 17 19 9.2e-05 0.0026 17.6 1.1 1 23 1162 1184 1162 1184 0.98 18 19 3.2e-06 9.2e-05 22.2 0.9 1 23 1190 1212 1190 1212 0.98 19 19 0.00012 0.0034 17.2 6.5 1 23 1218 1241 1218 1241 0.96
Sequence Information
- Coding Sequence
- ATGGATGCCAAAATAGGACATAAGGGTGAAGATATGGAAGGCAGCCATGTAAATAATGAGCAGAAATGTTACAATTCTTTATATATAGAACACAAAGATGTTCCTAATGTTGCTTCTAATtcttatgggccttcaggcTGTAAGAGAAATCTGGGAGACATATTACGACGAAACTGTACAAAACAAAATGCAGGTCAGGTTCCCAAAGTTAAGAGCTCCATGGAAACTATTAAATGTAAAACTCCTACAGATTCATTGGACATTACAGTTTGTACTAGAACTGCAGAGTACACATCTAAGGCTTCAAATGAACAGCCACAAAAAGGTATTCCAGTTGGTGCTGATAATTCTGTGAAATGTACAGCATCTTCCAGAGAGAAGAGTCATGCGAAAGAAATGTCAGCTAGTGTAATACTGCATAAACCTAAGCAAAAGCTTGAAGATTTCAACTTGAAAAATAGCAGATATGAGCCTGAACCAGCATATACAGATAGTTCCATGGTATTATGCATTAAGGAGGAAAAAGATAAATCATGTAAGAACAGTTGTGTGCCCTCTAAGCCTGTAAGAACTTCAACATTTGTGAATCTGACTACACCCAATATAGTAAAGATGTTGGAGAGTACAAATATGGATAAAGGTATGTTGTCCAAAACAGCAGTTAGCTCAATAGATTCGGTGACTGCGAATAACATGAAACATAAATCACCCACaagtactgccatctatgaTGAGAAAAGTCAGCCTAATACTAATGTCAGCTCAGCAGTGGAGCTGGTTCATCCTGATAGTGATGGAGACTCTGATCATCCTGGTCAACTATGCAGACTTTGTGCATTGCCCAGACAAAGTATGGTGTACATTTTTAGTGAAACAGGTCTCCAGCGTGGCTTACGTAGCAAGATTAATACATGGCTACCAACACATGTGAATAGAACTGATCCCTTGCCGAAGCAAGTATGTCATTTGTGTATTGAAAAGCTGGACTTGTGTCAGAACTTCGGTAATTCTTGTATAAAAGCCGAACAGAAACTTAACCAGTTATTTGAAAACAGGAAATTCAGatgCCGTTTTCGGACACATGGAGAAGCAGATGCTTCTTGCAGAAGGAATGATACTACTGTGGAAAGTTTGAAGCCAGGATCAACTTCAAAATATAACCAGATACTGGGTGAAAGTGTTGTACATGATGATCAAAATCATTGCATTTCAAAATCAAATATGAAAAGTGTATTATTATCATCTAGGAGAAGTACATACCAACATTATTGTAAAATTAATCCTATCAAATCAGAGAGTTTAACTTCAGAAGATGAGGAAGGTAATTGCTTAATTTCTGAAGATTCTTCTGAACTTGAACTTGTGGATATGATTCTGGGTGATGGTTACTGTCAAGGAGATACAAGAATTGCAGTGCCTTCCAACTATAGCTGCCCTCTTTGTTGTGACGGAAGTATGATTACTGTAAAACAGACACTTAAGGACACATTTTCTGCTTCAGAGAAGCCATACATTGAAGATATGGGTAGTGGAGCTGATACAAAAGGAATTAATCATATGAATGTAAAGAAATGTTTAAATGTATCTCCCAGTTCCAGGCTAAGTAGTCGGTATAGAAAAGGTGACTATGGTTCTGCTTGTGAATATGGCCCTATGGAACAAGATAGTGATCCAGAAGTTAATGGTGATACTGATTCTAATTCCTTTGTACTAAGCTGTACCAAAGTAAAAGAGGAGGATGATAATAGTATGGAAGGGACAGCAGCTAAGAACAACAGGGAATGTGATGAAAGACATGGTATTGTGACCATAAATACTAAACAGGGGCCTTTGATTGTAAAGTCTGAGAAGGCAGAAGATGATAGTCCTGTAAGCTGCTTAGTGTGTGGTGGAACTGTGATAAACTTGAACCAGTGTTTAATTCATGCATTACGTGCTCATGCAAACAGTGAAACACGTTCATATCCATGTAGTCTGTGTGAAATGTCCTTCTCTGTTGATACAGACTTAACTAGACATTACATGAATATACACCAGAATATAAAGGATGCACGATTGCTTCATGTCTGCATTATTTGTGGTCGGCATTGTGCTTCCCAGCGAGCCCTGAAATCCCATGTGTGTATTCCAATGAACTCTGTGCCTGACCAGCTGGCTTGCAAAACATGTGGCCAGTCTTTCAGCACCAAGGAGCGTCTTGTATTCCATCGCCAGTTCCATGATCCTGATGCCCGCTCTCTAGAGTGTGTCCCTTGTGGAATGGTTTTCACAGAAGAGGACAACTTATATGACCATGTTAGATTTACTCATCGAGGGCAGtcatttatttgtaatgaatgtGGAGGGCACTTCAATAGCAGAGCGGCTCTTCGGGGCCACCTTCGATCTCACCGAAAGTTGCGACATCATAAATGTGAAGTCTGCAACAAGACATTTCTTGATAAACAGACATTAAATGAACATTCAGTGTCTCACATGGAAGTGAAGCCATATCAGTGCCACATCTGTGGCAAATACCTAAACCGAAACTCACGACTCAAGAAACACTTGATGTCACATGAGCTGCAGAAGACTACAGATCCTCAGGAATGCTTCCAGTGCACAGTCTGTGGAGAGACTTTTCCAAATGAACCCAAAGCTGTTGCACATGCTCAGATTGGACATTCACTGCCCAGTGAAAGTGAATGTGTGTTCCACCTTTATCCAATGGACAAGGTTTACCGATGTGAGTTCTGTGAACGTATTTATGCTGATCCTGCTTTTCTCAGTGCACATCGATCAAGTCATACTGATGAGTCTTTTCCATTCAAATGTCACATATGTGGTGCAGGTTTTGCAACATTTGCTCGTGTAGCAACTCATAAAGTGACTCATGGCATCTATGATAAGAAAGATGAGTTCTCAATTCCAAAGTTTTATCTGTGTGACTCTTGTGATAAGGCATATATCCATTGGACATACCTCTCAGTTCATCGTAAGATGGTACATGCAGAGGTAAAACACATGTACAAATGCAAGATGTGTCCTGAGCAGTTTGTGAACTCGTGGAGTTTAGCATACCACCGAAAAACACGTCACTGTGAGACAGAACCGCCTCCATTGGATAGTAGCTTACCAGCAAATGAACGAAAGCGATGGAAATGTGAATGCTGTGAGAAGCGTTATGTGAGCCAACAGTCACTTTTAGCTCATGTTAATATATTTCACACTGGAGATAATCCTGGCCCTGCTTTTCAGTGTGATCAATGTGGGAAACAGTTTGCTCGCAAGTTGTCTCTGGATTCTCACAAGAAAACGCACAATGGAATAAAACCTCATGTGTGCCCTGTGTGCAAGAAGACGTTTGTACATATTTCAAGCCTTTCATCACATCTGCGGTTACATCGGGGTGATAAACCTCATTCATGTGAATATTGTGGCAAAACCTTTCTCCAGAGAGGAGACAGAGATGACCATGTTCGCAAACACACGGGAGAAAGACCATTTTCTTGTCAGCAGTGCCCTAAATCTTTTCGAACGCGAGCCATGTGGTTTGAACACACCAGAATCCACCGTGATGAACGTCCATTCCCTTGTGACATTTGTGGAGCTTCATTCCGCCGTTCATATTCTCTGAAAAATCACAAGACTACCCACTCAGGCGAGCGCCCACATGTGTGTCAGATATGTAATAAGACATTTAGGCAGAAGCAGCATATGCAGAAACATGTAAGAAACTATCACCAGGAAGAGATGAAGGAGCAGGAACCAAGTGATGATGtcataacatttatattacCTACAGATTAA
- Protein Sequence
- MDAKIGHKGEDMEGSHVNNEQKCYNSLYIEHKDVPNVASNSYGPSGCKRNLGDILRRNCTKQNAGQVPKVKSSMETIKCKTPTDSLDITVCTRTAEYTSKASNEQPQKGIPVGADNSVKCTASSREKSHAKEMSASVILHKPKQKLEDFNLKNSRYEPEPAYTDSSMVLCIKEEKDKSCKNSCVPSKPVRTSTFVNLTTPNIVKMLESTNMDKGMLSKTAVSSIDSVTANNMKHKSPTSTAIYDEKSQPNTNVSSAVELVHPDSDGDSDHPGQLCRLCALPRQSMVYIFSETGLQRGLRSKINTWLPTHVNRTDPLPKQVCHLCIEKLDLCQNFGNSCIKAEQKLNQLFENRKFRCRFRTHGEADASCRRNDTTVESLKPGSTSKYNQILGESVVHDDQNHCISKSNMKSVLLSSRRSTYQHYCKINPIKSESLTSEDEEGNCLISEDSSELELVDMILGDGYCQGDTRIAVPSNYSCPLCCDGSMITVKQTLKDTFSASEKPYIEDMGSGADTKGINHMNVKKCLNVSPSSRLSSRYRKGDYGSACEYGPMEQDSDPEVNGDTDSNSFVLSCTKVKEEDDNSMEGTAAKNNRECDERHGIVTINTKQGPLIVKSEKAEDDSPVSCLVCGGTVINLNQCLIHALRAHANSETRSYPCSLCEMSFSVDTDLTRHYMNIHQNIKDARLLHVCIICGRHCASQRALKSHVCIPMNSVPDQLACKTCGQSFSTKERLVFHRQFHDPDARSLECVPCGMVFTEEDNLYDHVRFTHRGQSFICNECGGHFNSRAALRGHLRSHRKLRHHKCEVCNKTFLDKQTLNEHSVSHMEVKPYQCHICGKYLNRNSRLKKHLMSHELQKTTDPQECFQCTVCGETFPNEPKAVAHAQIGHSLPSESECVFHLYPMDKVYRCEFCERIYADPAFLSAHRSSHTDESFPFKCHICGAGFATFARVATHKVTHGIYDKKDEFSIPKFYLCDSCDKAYIHWTYLSVHRKMVHAEVKHMYKCKMCPEQFVNSWSLAYHRKTRHCETEPPPLDSSLPANERKRWKCECCEKRYVSQQSLLAHVNIFHTGDNPGPAFQCDQCGKQFARKLSLDSHKKTHNGIKPHVCPVCKKTFVHISSLSSHLRLHRGDKPHSCEYCGKTFLQRGDRDDHVRKHTGERPFSCQQCPKSFRTRAMWFEHTRIHRDERPFPCDICGASFRRSYSLKNHKTTHSGERPHVCQICNKTFRQKQHMQKHVRNYHQEEMKEQEPSDDVITFILPTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -