Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:159945-167623[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.8e-06 0.00025 20.8 4.3 1 23 201 223 201 223 0.97

2 11 0.0015 0.043 13.8 5.7 1 23 229 251 229 251 0.98

3 11 1.5e-06 4.3e-05 23.2 1.3 1 23 257 279 257 279 0.98

4 11 1.6e-05 0.00044 20.0 0.4 1 23 290 312 290 312 0.97

5 11 0.00066 0.019 14.9 2.5 3 23 320 340 318 340 0.96

6 11 3.6e-07 1e-05 25.2 0.9 1 23 346 368 346 368 0.99

7 11 0.0059 0.17 11.9 4.0 1 20 374 393 374 396 0.93

8 11 1e-07 3e-06 26.9 0.7 1 23 402 424 402 424 0.98

9 11 4.9e-06 0.00014 21.6 0.8 3 23 432 452 430 452 0.95

10 11 8.4e-07 2.4e-05 24.0 1.3 1 23 458 480 458 480 0.98

11 11 0.0001 0.0029 17.5 4.2 1 23 486 509 486 509 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.8e-06	0.00025	20.8	4.3	1	23	201	223	201	223	0.97
2	11	0.0015	0.043	13.8	5.7	1	23	229	251	229	251	0.98
3	11	1.5e-06	4.3e-05	23.2	1.3	1	23	257	279	257	279	0.98
4	11	1.6e-05	0.00044	20.0	0.4	1	23	290	312	290	312	0.97
5	11	0.00066	0.019	14.9	2.5	3	23	320	340	318	340	0.96
6	11	3.6e-07	1e-05	25.2	0.9	1	23	346	368	346	368	0.99
7	11	0.0059	0.17	11.9	4.0	1	20	374	393	374	396	0.93
8	11	1e-07	3e-06	26.9	0.7	1	23	402	424	402	424	0.98
9	11	4.9e-06	0.00014	21.6	0.8	3	23	432	452	430	452	0.95
10	11	8.4e-07	2.4e-05	24.0	1.3	1	23	458	480	458	480	0.98
11	11	0.0001	0.0029	17.5	4.2	1	23	486	509	486	509	0.97

Sequence Information

Coding Sequence: ATGACCCTcaactttaataaaatatgtcgACTGTGTATGGTAGAAGATACACAGTTGTTACCACTCTTTCTACACGATGACAATCTaattgacagattactgacacTTGTACCCATACTGAAGATGAATGTTGAGGATGGTCTGCCAACCCAAGTGTGTCCCACATGTGTGCATCAAGTGAACACAAGCTACAGCTTCAAGTTGCAATGTGAATCTAGTGATGTAACCCTCAGACAACTCCTAAACTTCCAAGAGAGACAGGTATTACAGGATGAAATCTGTGAAGTTACCTCTGTGAAAGAGGAATCTGATGATCAAATTACTGTTGATGATAACAACTTAGGATTTGATGATGACAGCCATGAGATAAATGGTGGCTTCAACAGATATGACGCAGGCAATAGTCCTCTCCTAAATGACATAAACCGAATTCCACTCCTTAGTATCTTCAACAAGGAAACAGTTAATGCTGAAAAGATTGCTGTTGGGCAGCATCATGATGTTGATCAAGAGTGCAAAACTACATCGAGGAAAATTCAAGTCTCTTCTTTGAGCCCTAATGAGAGAGGTTTATGTCATGTTAAGGCTTCAAGAAAGAAACATACGTGTAGCGAGTGTGGAAAGCAATTTATATATCACACAAATCTCAATCGCCACATGTTGTTACATATGGGAACTGAATCATACACTTGTGATATTTGTGGAAAGCAGTGTGCATTAAAGCACACATTAAAAATACACCATAAAATACACACAAGGGGTAACCAGTATTTCTGCAAGGAATGTGATAAAAGTTTTGCACTGAGcatagaattaaaaaaacacatGAAGTCTCATATAGAATTTACTGAAACagataaaaagaattttgtatgTGATGTCTGTGGACGACTCTTTCGCATTAGAAGAAATCTTAAACGTCATATGGTAGTTCATACAGGAGAACGTCCATATGGTTGCCATATTTGTGGGAAGAGATTTTCTGTTAAGAACTATATGAAGAGCCATTTTATGCTCCATACAGGAGAAAAACCATATTCCTGTGAAGAGTGCGGATCCCGTTTTGCACAGAGAAGTAATTTGTCAACTCATATGAAAACTCACACAGGAGAACGGCCACACTCTTGTGTCCAGTGTGGAAAGAGATTTGCAAGGATAAGACACTTGCAGATGCATCTGATTTGTCATACAGGGGAGAGGCCTTTCAGCTGTTCAGAATGTGACAAGTCATTTGGGCGTAAAGATGGACTACAGAAGCATATGTTGATGCATACTGGGCACAGACCACATCTGTGCCCATCATGTGGTAAAGGCTTTGCAAGGAGCTCTCAACTAAAAGTTCATGTaacaacacacacagatattAAACCTTTTACATGCACAGAGTGTGGTAAAACATTTGCTAGAAAAGATCGTTTGAAAGACCATCTCTCATCTCATTATGGTACAAGGCCTTTTTCATGTCAGAATTGTAAAAAGGGATTTGTAAGGAGGGAACATTTGAAGTATCATTTGAACAGCACACAtgggaaacagaaaataaattcatga
Protein Sequence: MTLNFNKICRLCMVEDTQLLPLFLHDDNLIDRLLTLVPILKMNVEDGLPTQVCPTCVHQVNTSYSFKLQCESSDVTLRQLLNFQERQVLQDEICEVTSVKEESDDQITVDDNNLGFDDDSHEINGGFNRYDAGNSPLLNDINRIPLLSIFNKETVNAEKIAVGQHHDVDQECKTTSRKIQVSSLSPNERGLCHVKASRKKHTCSECGKQFIYHTNLNRHMLLHMGTESYTCDICGKQCALKHTLKIHHKIHTRGNQYFCKECDKSFALSIELKKHMKSHIEFTETDKKNFVCDVCGRLFRIRRNLKRHMVVHTGERPYGCHICGKRFSVKNYMKSHFMLHTGEKPYSCEECGSRFAQRSNLSTHMKTHTGERPHSCVQCGKRFARIRHLQMHLICHTGERPFSCSECDKSFGRKDGLQKHMLMHTGHRPHLCPSCGKGFARSSQLKVHVTTHTDIKPFTCTECGKTFARKDRLKDHLSSHYGTRPFSCQNCKKGFVRREHLKYHLNSTHGKQKINS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -