Csec011776.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:287097-294935[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.025 0.72 9.9 9.5 1 23 114 136 114 136 0.96 2 21 0.02 0.57 10.3 3.1 1 23 169 191 169 191 0.97 3 21 0.002 0.056 13.4 3.8 2 23 200 221 199 221 0.96 4 21 0.0014 0.039 13.9 2.9 2 23 232 253 231 253 0.94 5 21 0.028 0.8 9.8 2.1 1 23 259 282 259 282 0.94 6 21 0.01 0.28 11.2 1.2 2 23 287 308 286 308 0.96 7 21 0.00015 0.0043 17.0 0.1 1 20 316 335 316 337 0.94 8 21 0.00047 0.013 15.4 0.5 1 23 345 367 345 367 0.94 9 21 0.0019 0.055 13.5 1.9 1 23 373 395 373 395 0.95 10 21 0.00048 0.014 15.4 1.2 1 23 401 423 401 423 0.93 11 21 0.039 1.1 9.3 1.4 1 23 429 451 429 451 0.98 12 21 0.0038 0.11 12.5 0.1 1 23 862 884 862 884 0.98 13 21 0.087 2.5 8.2 5.4 1 21 932 952 932 954 0.92 14 21 0.026 0.74 9.9 6.5 2 23 963 984 962 984 0.94 15 21 0.03 0.86 9.7 2.2 1 23 990 1013 990 1013 0.96 16 21 8.6e-06 0.00024 20.9 3.7 2 23 1018 1040 1017 1040 0.94 17 21 2.7e-05 0.00078 19.3 0.1 1 20 1048 1067 1048 1069 0.94 18 21 0.035 1 9.5 0.2 1 23 1077 1099 1077 1099 0.90 19 21 0.0019 0.055 13.5 1.9 1 23 1105 1127 1105 1127 0.95 20 21 0.00048 0.014 15.4 1.2 1 23 1133 1155 1133 1155 0.93 21 21 0.047 1.3 9.1 1.2 1 23 1161 1183 1161 1183 0.98
Sequence Information
- Coding Sequence
- ATGACATCAGTCCACAGTAATGGCAGAAAACAGAAGAAGGGTGTTGGAGAAGATGATGATACAGACAATACAGATTTCAGTCCCACACGGTTTTTAACTGTTACGTATAATGAAAATACAGATGAAATTTCAGCCTGTGAAAGTGTGTCATCTGCCATCAAAGATGTCTGTACCATGCGTGAGGATGTGCATTACAGCATGCTGGAAGACAGTCATCAGAGAAGTAAAAATAAACCGCGGGGAATGTGTCAGCATTTGGCTACACCTGCAACATCAGTGCAACCAACACATGGCAAGAAAAGCAAGAACAAACACCATTTGAATTTAGAACAAGCTCACTACTGTTGCACATGTTGCAACAGATTCTTTACTCAGAAGCAGTCGCTGCGACGTCACATGAAACTGCACACTACCAACATCAGTAGAAGAATGAGTGAGGCATTAGACAAAAAATCAGAACAAAAGAAGGAAGTGCAGAGATATGGAGGCTTTGAGAAAGTTCCATATTTTTGTGAGACTTGTGGCATGGATTGTAAGCATAAAGCAGGTTACATACAACATCAAAATATCCacaagagaaaagaaaagaaattgctCTCATGTCACATATGTAGAAAGGAATTTAGATTTAATTCATTGCTGCTTCACCATGTGGAAAGCCACAAGCCCAAATCTAAAATGAGAAAGTCGTTATCTTGTCATACTTGTGGGAAGAAGTATAGTAAAACTGGCAGCTTAACAAAACACGAGCTTCAGCATGAGGGGAAGGGAAGTTTCCGCTGTCGTCCTTGCGGCAAAGTGTTTAGTACCACAACTGAGCGGACAAAACACCGTAATGAGAAACATGAGAAACCTTGGAAATGTCCAACATGCAGTCACATGTTTGCCACCAAACAGAAGCTGGATTCCCATGTGCAGTGGCATGAAAGCAAGGAGACAGAAGTGTTTGTTTGTAGTGTGTGTGGTAAAGAATTCAGACTGAAAGTAAATCTCAAGGTTCACGTAGAGAGTCGATGCGGTACAGACCCACAGCACGTGTGTAATGTTTGTGGGAAGGCTTTTATGACACGTGGAACACTTGTTACACATTCGTTGCTCCACACGGGTGAGAAAACATTCCTCTGTCGTTTCTGTGGTAAGAACTTCCGTCTCAAAGTGGAGATGCAGAGACATGAAAGGTCTCACACGGGAGAAAAACCGtttgtttgtaaagtgtgtaataaAGCTTTTGCTCACAGGGAAAGCCTCGTTACACATAACACTCTTCATACAGGGATACGCCCTTACATGTGTGAAGCTTGTGGCTCCACCTTCTCATGTATCGGGAATCTcatcaaacacagaaaaactcaccgTAACAGATGTGCTCTAGTCACTCCTGTCGTGACATCCAGTAAAGCAAGGGTAAAATCAACTGCTAATCACTTAAAAGTGTGTGTAAAGAATCTTCCAAAAACAAGTCCATCTGTCGAACAGTTAATGAATCATGTAATGTCAGAAGGACGGATACCTAATAACAACGAAGAGGCTTCTGTCGTCCTGGGTGGTTCTTACAGCTACAGAAATTCAAATTATGATGGGAATCATGACTGGACCTCACCTGTCTTCAGTAGTAGGGATCATGAAATAACTGAGCAAACTGCAGTAACAAATGATAGGTTACATTCAATTGCTGATCTTCACCTTAGTAGTATGGAACAAAATGCTAAAAGTACTCAATATTATTGGGGTAGCGGGCTGCATCCTGATGCCGTCCAGCCATTTGGAATATGCAGTGCAATTTGTAAGGACTCAACAAGAAGTCTTCCATATCCTTGCTCTACTGATGGGTTACTCGTTAGTAACAACGAAAAACATACAGTTGGTAACTTCTTCCAGAAGTTAGACAATCATAGGCTTCAAAGTTACGGTATAGAGAAACATCCTCATGACCACAGAGTTCAGAATGCAGGTAATGAAAAGTGTTCCTATGGTCAAAAGATGGCAGTTGACCCTTACCAACAGAGTAACTTTAAATCACTAGATCATGTTACTCAGAGTACAGTAACCACTCAAAGGGAGCCAGATTCTGGCTCTGACAGTCCTGCTTCAAAAACAGCTGCTTTGATCAATGGATTGGAGAACCGCAGTGTATGTGATTACATACCCACTGAAAGTGATGATTTTGTGGCCAATCACACCACAGGAGAAAACTTGGTTGGGAACATGAAATCTGAAGATGCGTATAATaataaacacagtaatgatcTCTGTGATGCAGTTCATGAAACAGATGAACTATCAACTGCTGCATCACCTGCTACAAACAATTCAGACAGTGAATTATCAGAGCATGAAGAAATAGGTATCTTTGCTTCGAAAGTACAAGTAGATTGTAATAATACTATAAGAAAAGAAAGTGAGGTACATATGGGTAaaagtgaatatgatgatgtaAAACCAGTATTTGAATCTGAAGTAGTCGTTTCATTCAAGAAGATGCCTCGTGAACGGAAACAAAAATATCCTGCAAGATGTGATATTAAAAGTGAAGAATCAAAACCAACTTCAATTTCTAAAACTACAAGTGATCATGAAGATCAGTTTTCATGTGTTCTATGTGGTTTGGGTTTTGCTCAAGAACAGTTGTTAACTGAACATACACAGTCTCATTGTGATAGCAGTAATGAAATAGACACAGTCATTTGTCAGAAAACAGGTCCTGCCTCAGAGGACGATGAGCCATTAGATAGACGCTTGGAACGTCATTTAAAgaaagtggaaattcttcattCAGAACCAGTGCCAAGAAAGTTTCTCTGTCAGtattgcaataaatattttgaatttgtgTCACAATTAAATCGCCACAGGAAATGTCATTCATCAGACGAAAAAGAAGCAACTCCATGCCGTCACTGTGGTAAAAAGTATACACACAGAGCCTGTTTAATAAAACACGAATCGCAACACACAGGCACTGGCGCCTTTAAGTGCAAACAGTGTGATGATGGTTTCAATTCAAAACAAGAATATCGATCTCATCGTGCAAAGCAACATGGAAAGCAGTGGAGCTGTTCAGAATGTCACCGCTCTTTCTCAAACTCAAGTAATCTAAAAaatcattataataataaacatctTGGTCATGAGGCAAAATCTTATGCATGTAATATTTGTGGCAAGCTGTTCAAACAGAAAGGGAACCTCAAAGTTCACGTGGACAGTCGGTGTGGGTCAGAACCAAGACATGTGTGTAGCGTCTGTGGCAAAGCATTTATGAGCGGTGGTTCTCTTGGTACCCACTCGCTACTCCACACGGGTGAGAAAACATTCCTCTGTCGTTTCTGTGGTAAGAACTTCCGTCTCAAAGTGGAGATGCAGAGACATGAAAGGTCTCACACGGGAGAAAAACCGtttgtttgtaaagtgtgtaataaAGCTTTTGCTCACAGGGAAAGCCTCGTTACACATAACACTCTTCATACAGGGATACGCCCTTACATGTGTGAAGCTTGTGGCTCCACCTTCTCATGTATCGGGAATCTCATCAAACACAGGCAGACCCATAATAGAAGATGTGATATTGCAAGACAATGA
- Protein Sequence
- MTSVHSNGRKQKKGVGEDDDTDNTDFSPTRFLTVTYNENTDEISACESVSSAIKDVCTMREDVHYSMLEDSHQRSKNKPRGMCQHLATPATSVQPTHGKKSKNKHHLNLEQAHYCCTCCNRFFTQKQSLRRHMKLHTTNISRRMSEALDKKSEQKKEVQRYGGFEKVPYFCETCGMDCKHKAGYIQHQNIHKRKEKKLLSCHICRKEFRFNSLLLHHVESHKPKSKMRKSLSCHTCGKKYSKTGSLTKHELQHEGKGSFRCRPCGKVFSTTTERTKHRNEKHEKPWKCPTCSHMFATKQKLDSHVQWHESKETEVFVCSVCGKEFRLKVNLKVHVESRCGTDPQHVCNVCGKAFMTRGTLVTHSLLHTGEKTFLCRFCGKNFRLKVEMQRHERSHTGEKPFVCKVCNKAFAHRESLVTHNTLHTGIRPYMCEACGSTFSCIGNLIKHRKTHRNRCALVTPVVTSSKARVKSTANHLKVCVKNLPKTSPSVEQLMNHVMSEGRIPNNNEEASVVLGGSYSYRNSNYDGNHDWTSPVFSSRDHEITEQTAVTNDRLHSIADLHLSSMEQNAKSTQYYWGSGLHPDAVQPFGICSAICKDSTRSLPYPCSTDGLLVSNNEKHTVGNFFQKLDNHRLQSYGIEKHPHDHRVQNAGNEKCSYGQKMAVDPYQQSNFKSLDHVTQSTVTTQREPDSGSDSPASKTAALINGLENRSVCDYIPTESDDFVANHTTGENLVGNMKSEDAYNNKHSNDLCDAVHETDELSTAASPATNNSDSELSEHEEIGIFASKVQVDCNNTIRKESEVHMGKSEYDDVKPVFESEVVVSFKKMPRERKQKYPARCDIKSEESKPTSISKTTSDHEDQFSCVLCGLGFAQEQLLTEHTQSHCDSSNEIDTVICQKTGPASEDDEPLDRRLERHLKKVEILHSEPVPRKFLCQYCNKYFEFVSQLNRHRKCHSSDEKEATPCRHCGKKYTHRACLIKHESQHTGTGAFKCKQCDDGFNSKQEYRSHRAKQHGKQWSCSECHRSFSNSSNLKNHYNNKHLGHEAKSYACNICGKLFKQKGNLKVHVDSRCGSEPRHVCSVCGKAFMSGGSLGTHSLLHTGEKTFLCRFCGKNFRLKVEMQRHERSHTGEKPFVCKVCNKAFAHRESLVTHNTLHTGIRPYMCEACGSTFSCIGNLIKHRQTHNRRCDIARQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -