Csec004192.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptotermes secundus
Gene Symbol
-
Assembly
GCA_002891405.2
Location
NW:781747-831844[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2.1e-06 5.9e-05 22.8 0.7 1 23 176 198 176 198 0.99
2 12 4.3e-06 0.00012 21.8 2.3 1 23 203 225 203 225 0.99
3 12 0.0001 0.0029 17.5 3.9 1 23 231 253 231 253 0.98
4 12 1.4e-05 0.00039 20.2 2.6 1 23 259 281 259 281 0.99
5 12 6.7e-06 0.00019 21.2 1.0 1 23 287 309 287 309 0.99
6 12 6.9e-05 0.002 18.0 0.9 1 23 315 337 315 337 0.98
7 12 1.6e-05 0.00047 20.0 1.1 1 23 343 365 343 365 0.99
8 12 7.8e-06 0.00022 21.0 1.1 1 23 614 636 614 636 0.99
9 12 6.2e-05 0.0018 18.2 3.3 1 23 642 664 642 664 0.99
10 12 1.5e-05 0.00043 20.1 3.6 1 23 670 692 670 692 0.99
11 12 2.4e-07 6.9e-06 25.7 1.1 1 23 698 720 698 720 0.99
12 12 3.5e-05 0.00099 19.0 0.6 1 21 726 746 726 747 0.94

Sequence Information

Coding Sequence
ATGCTGAACATTAAAATGGctataaagaaagaaaagtacGAGTTGATCGAAGAAATACCCGACGATTCATCACTTAAGCGAGATCAGCGTATTGATATAAAGTATGAGGAGGGTTATGATCTACCTGCATTTCCAGTAATTCTATGTGAAGATAAGCTTATCATGGACGTTAAACTGGAACCAGATTCAGACAGCGATGGTCACCAGATGTCTTCAGTGAATGATGGCTCTTTCGGTGGCATGAAAGAGGAACAACGAACTTTGTCGGAGATTACAAGTGAGGTAAAGGAAGAATCGTGGAATGTTGGGGAGTTCCTAGAAGTGGAAGTGACAACAGAAGAACATGAAGTCCGTCGCAAGAGAATGGAGCAGTATAATAATGAACTCAAGGAGTCATTTGGTGGTGATGTCCATATGTATGGTCAGCAGATTCGCAGCGCAGTATCGGATGGTTGTCGTGATTATGTAaacacaaaagtttctggaaaCACTGATGGTGGTTCCCAAACAAATGCAGTGGAATGTTATAAATGTAAcacatgtaataaaatattcccAAAGCGGAATGGACTTATCCGACATATCCGTATACACAATAAAGAGGCTTACAAATGTCAAACTTGCCACAAAGTTTTTGCACGAAGTGACTATCTGGATGCACATAGAAGAATTCACACTGGAGAGAAACCATATTCATGTGAAGTCTGCAATAAGCGTTTTACCCACAGAGGATCCCAAAGGAACCATCAACTCACCCACAGTGGAGGAAAATCATATCAGTGTGAAATATGTAAGAAGTATTTCTCTCGCAGAAATACACTATATGTACATTACCGCATCCACTCTACAGATAGACCTTATAAATGTGAAGTTTGTGATAAGAATTTCTTACGTAAAGAAAACCTGACTGTTCATAGGCGTGTTCATTCTGGGGAGAAACCGTATAGTTGTGATGTTTGTAATGAACGTTTTTCATTAGGGTCGACTCTTAAGAAGCATTATCGTATACACACAGGCGAGAGACCGTATAAGTGTGATGTTTGTAGTAAAGCTTTCCGTCAGGGTGTCAGTCTTCTTAAACATAAACGCACTCACACTTGGCATCCAGGTACAAATCACAATAAAATGTGCCCTGTCAGTATTGGAGGACCTGGGAAGAAACATTTCCAACAAATGGGAGGGCACATGTCTGTACATGTACCCTTGATGAAGGTGGGAGGTGAAGAACTCATGTCACTGGTAGAATGTACTGCAACAAACATTATGATCCATCTTCTGCAGTCATGTTATCACAACAGGGTTGATGGTCTTCAGGTCAACATGGACGCAGTCAAAGAAGAACTTGATTCAAATAGAGAGGTGCTGCCAGTATTCACATTAGTCAACATAAAAACTGAACCAGAAACAGACATGATTGAGGAGTCATCTGAAGAGATGTCAGGCCATACTTCTGATTTGGAAACAAATGAAGATGCACTTACTGAAAACACAAGCACTCCAAGCACCAAGGAGAGATCCAGCATTCTTGCAGCGATGCGCAGAGCCATGTCAGAGGGAGGAACTCAGCTGGACCCTGAGAGCAGTGATGAACTAATATGTGGTGATACTACAGATCACGGAGACTCATGGAAGTCTGAAATATCAAACAAGGAACAGGAAGTGTCTCTACAAACCTTGGAAGAGTTAGCAGTGTGTCAGGATGACTCAGCTGGTGATAGCAGTTCAGCACAAATTGACTTCAATTTTCCGACTAAGCAGGAATTTCCTGTTGAATCTTTTCCCAGTAGTCAAACTGGGAAATGCGATAAGAGTTGTCAGACTGCACGTGAAATAGAATATTATAAATGTAAAGTATGCAAAATGGTATTTCCTACAAAAAAGTATCTGATGTTGCATATTCTTACACACACTGACAAGAACCCATATAAGTGTGACATGTGCAGTAAAACGTTCTTGCACAGTGGAAATCTCGCAAGACATCGCCGCAGTCACAAAGGAGAGAAGCCATATACGTGTGACTTGTGCAAAACAAATTTTTCACGCAGGGAAACTTTGCAACGACATTTCCGAACTCATACAAGGGAAAAGCCGTTTAAATGTGGAATATGTAATAAGTCTTTCTCGGATAGTGGTTATCTTGTGACGCACCGACGTACTCATACTGGAGAAAAGCCGTATAAGTGTGACATGTGCAACAAAGAGTTCACTCAAGGGGGAAATCTTACTAGACACAAAAGTACATCTGGGGTATGCAAACTGTTGGGAACTAAACTGCTCTGTTAA
Protein Sequence
MLNIKMAIKKEKYELIEEIPDDSSLKRDQRIDIKYEEGYDLPAFPVILCEDKLIMDVKLEPDSDSDGHQMSSVNDGSFGGMKEEQRTLSEITSEVKEESWNVGEFLEVEVTTEEHEVRRKRMEQYNNELKESFGGDVHMYGQQIRSAVSDGCRDYVNTKVSGNTDGGSQTNAVECYKCNTCNKIFPKRNGLIRHIRIHNKEAYKCQTCHKVFARSDYLDAHRRIHTGEKPYSCEVCNKRFTHRGSQRNHQLTHSGGKSYQCEICKKYFSRRNTLYVHYRIHSTDRPYKCEVCDKNFLRKENLTVHRRVHSGEKPYSCDVCNERFSLGSTLKKHYRIHTGERPYKCDVCSKAFRQGVSLLKHKRTHTWHPGTNHNKMCPVSIGGPGKKHFQQMGGHMSVHVPLMKVGGEELMSLVECTATNIMIHLLQSCYHNRVDGLQVNMDAVKEELDSNREVLPVFTLVNIKTEPETDMIEESSEEMSGHTSDLETNEDALTENTSTPSTKERSSILAAMRRAMSEGGTQLDPESSDELICGDTTDHGDSWKSEISNKEQEVSLQTLEELAVCQDDSAGDSSSAQIDFNFPTKQEFPVESFPSSQTGKCDKSCQTAREIEYYKCKVCKMVFPTKKYLMLHILTHTDKNPYKCDMCSKTFLHSGNLARHRRSHKGEKPYTCDLCKTNFSRRETLQRHFRTHTREKPFKCGICNKSFSDSGYLVTHRRTHTGEKPYKCDMCNKEFTQGGNLTRHKSTSGVCKLLGTKLLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-