Csec001440.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:12663-26380[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.008 0.23 11.5 1.2 7 23 225 241 216 241 0.89 2 13 1.1e-07 3.2e-06 26.8 1.7 1 23 247 269 247 269 0.98 3 13 4.9e-05 0.0014 18.5 0.7 1 20 275 294 275 297 0.93 4 13 0.00095 0.027 14.4 4.1 1 20 303 322 303 325 0.93 5 13 7.2e-06 0.0002 21.1 0.4 1 23 331 353 331 353 0.98 6 13 4.5e-06 0.00013 21.8 3.2 1 23 359 381 359 381 0.98 7 13 4.9e-05 0.0014 18.5 0.7 1 20 387 406 387 409 0.93 8 13 9.3e-07 2.7e-05 23.9 0.6 1 23 415 437 415 437 0.98 9 13 1.3e-06 3.7e-05 23.4 0.7 1 23 443 465 443 465 0.98 10 13 0.00011 0.0031 17.4 0.4 1 23 471 493 471 493 0.98 11 13 8.4e-05 0.0024 17.7 3.3 1 23 499 521 499 521 0.98 12 13 6.5e-05 0.0018 18.1 0.8 1 23 527 549 527 549 0.98 13 13 0.0013 0.036 14.0 4.2 1 21 555 575 555 576 0.94
Sequence Information
- Coding Sequence
- ATGTGTGATGATCAAGTTTCAGGCTCACAAAAGATTCTGCAGTCCGTTGCAGCAGGAGTGCCAAAAATTGTAGTACAGAGAGCTGAGGAAATATTTCCTGCTGTAAAACAAATGATGAACTGCTTGAATTCACAGAAAGAAGTACCAGGCTCACATAGTGAGGCCTGTTTGTCATTGTCTCTCAGTGGAGTTCAGGCTGTCAACATAAAAGTTGAAGAAGTCTCAGATATGGAAGGTGGGGAGGATCCTGTGCCAATGCCAGTTGTAGGAATAAAGGCTGCACATGAGGAGGATGTACCAGCCTCGCATAGTGAGGCCTGTTCATCATCTTCTCTCAGTGGAGTTCAGGCTGTCAACATAAAAGTTGAAGAATATTCAGATATGGAGGGTGGGGAGGATCCTGTGCCAATGACAGTTGTAGGAATAAAGGCTGAACATGAGGACTGTCCACATCCACACGAAGATGTCCCAGGTTCATATACTGACACATGTCCTACAACTTCTCATGGTGCATTTCAGGCCATCAGTATAAAAGATGAGGAGGTCTCGGATGTTGAAGAGGTGGAGGATCCATTGTCGATATCATTTCCAGGAATAAAGGCTGAACATGCGAGTGTGCTGAATCACCATCAATTCATACAAAGTGAGTGTCCATTTCCCTGTGATGTTGATAATAAGTCATTCACCCGTAGTAGTCGTCTGAAGAGACATCTGCATAAACATGCTGCAGCCCGATCATTTTCTTGTGATgtttgtaataaatcattcagtagGCGGGATTATTTGAAGGAACATCAACGcgtacatagtggggagcggccatatTCTTGTGATGTTTGTAATAAAACATTCAGTAGGCTCAATTTTTTGAAGGCTCATCAGCCCATACATAGTGGGAAGCGGGCATTTTCCTGTGATgtttgtaataaatcattcattaGGCGCTGTTGTTTGAAGGCTCATCAGCCCATACATAGTGGGAAGCGGGCATTCTCCTGTGcagtgtgtaataagtcatatACCACTAGCAGTGCATTGGCAAtgcataaacgcatacatagtgaTGAGCGGCCATTTTCCTGTGATATGTGTAATAAAACATTCGGTAGGCAGGATTGTTTGAAGGAACATCAACGcgtacatagtggggagcggccatatTCTTGTGATGTTTGTAATAAAACATTCAGTAGGCTCAATTTTTTGAAGGCTCATCAGCCCATACATAGTGGGGCGCGGCCATTCTCCTGTGcagtgtgtaataagtcatttagcaCTAGCAGTACGCTGGCAGtgcataaacgcatacatagtgaggagcggccattttcctgtgatatgtgtaataagtcatatACCACTATCAGTGCCCTGAAGGTACACCAacgcatacatactggggaacGGCCATTTTCCTGTGCTGtgtgtagtaagtcatttgccACTAACAATGTGCTGACGGtacataaacgcatacatagtgagGAGCGGCCATTCTCCTGTGATATGTGTAATGAGTCATGTGTGTCTAAGTTTCAGCTTAAGGTACATCTACGCAAACATAGTGGAGAGCGGTTATTTTCCTGTGATATGTGTACTAATTCATATACCACTAGCAGTGCCCTGAATGTACacaaacgcatacatagtggcgagcggccattttcctgtgatatgtgtaataaatcatttattttgaaatgtcatTTGAAGGCACATCAACATGTATGCAgtcggtaa
- Protein Sequence
- MCDDQVSGSQKILQSVAAGVPKIVVQRAEEIFPAVKQMMNCLNSQKEVPGSHSEACLSLSLSGVQAVNIKVEEVSDMEGGEDPVPMPVVGIKAAHEEDVPASHSEACSSSSLSGVQAVNIKVEEYSDMEGGEDPVPMTVVGIKAEHEDCPHPHEDVPGSYTDTCPTTSHGAFQAISIKDEEVSDVEEVEDPLSISFPGIKAEHASVLNHHQFIQSECPFPCDVDNKSFTRSSRLKRHLHKHAAARSFSCDVCNKSFSRRDYLKEHQRVHSGERPYSCDVCNKTFSRLNFLKAHQPIHSGKRAFSCDVCNKSFIRRCCLKAHQPIHSGKRAFSCAVCNKSYTTSSALAMHKRIHSDERPFSCDMCNKTFGRQDCLKEHQRVHSGERPYSCDVCNKTFSRLNFLKAHQPIHSGARPFSCAVCNKSFSTSSTLAVHKRIHSEERPFSCDMCNKSYTTISALKVHQRIHTGERPFSCAVCSKSFATNNVLTVHKRIHSEERPFSCDMCNESCVSKFQLKVHLRKHSGERLFSCDMCTNSYTTSSALNVHKRIHSGERPFSCDMCNKSFILKCHLKAHQHVCSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -