Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:131262-152874[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.06 1.7 8.8 0.3 2 23 425 447 424 447 0.96

2 16 0.00098 0.028 14.4 2.5 1 21 452 472 452 474 0.93

3 16 0.00017 0.0048 16.8 2.1 1 23 487 510 487 510 0.93

4 16 0.0048 0.14 12.2 0.2 1 23 516 538 516 538 0.98

5 16 5.4e-06 0.00015 21.5 3.3 1 23 544 566 544 566 0.96

6 16 6.5e-06 0.00019 21.2 1.0 2 23 576 597 575 597 0.97

7 16 0.0021 0.059 13.4 2.8 1 23 603 625 603 625 0.93

8 16 1.5e-05 0.00043 20.1 3.5 1 23 631 653 631 653 0.99

9 16 0.0024 0.069 13.1 0.2 1 23 659 681 659 681 0.99

10 16 0.00033 0.0093 15.9 0.2 1 23 705 727 705 727 0.99

11 16 1.4e-05 0.00041 20.1 0.6 1 23 733 756 733 756 0.98

12 16 0.2 5.8 7.1 0.5 1 23 762 784 762 784 0.93

13 16 0.00033 0.0095 15.9 0.5 1 23 790 812 790 812 0.98

14 16 1.1e-05 0.0003 20.6 1.9 1 23 818 840 818 840 0.97

15 16 7.2e-06 0.0002 21.1 3.6 1 23 846 868 846 868 0.98

16 16 2.2e-06 6.4e-05 22.7 0.9 1 23 874 896 874 896 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.06	1.7	8.8	0.3	2	23	425	447	424	447	0.96
2	16	0.00098	0.028	14.4	2.5	1	21	452	472	452	474	0.93
3	16	0.00017	0.0048	16.8	2.1	1	23	487	510	487	510	0.93
4	16	0.0048	0.14	12.2	0.2	1	23	516	538	516	538	0.98
5	16	5.4e-06	0.00015	21.5	3.3	1	23	544	566	544	566	0.96
6	16	6.5e-06	0.00019	21.2	1.0	2	23	576	597	575	597	0.97
7	16	0.0021	0.059	13.4	2.8	1	23	603	625	603	625	0.93
8	16	1.5e-05	0.00043	20.1	3.5	1	23	631	653	631	653	0.99
9	16	0.0024	0.069	13.1	0.2	1	23	659	681	659	681	0.99
10	16	0.00033	0.0093	15.9	0.2	1	23	705	727	705	727	0.99
11	16	1.4e-05	0.00041	20.1	0.6	1	23	733	756	733	756	0.98
12	16	0.2	5.8	7.1	0.5	1	23	762	784	762	784	0.93
13	16	0.00033	0.0095	15.9	0.5	1	23	790	812	790	812	0.98
14	16	1.1e-05	0.0003	20.6	1.9	1	23	818	840	818	840	0.97
15	16	7.2e-06	0.0002	21.1	3.6	1	23	846	868	846	868	0.98
16	16	2.2e-06	6.4e-05	22.7	0.9	1	23	874	896	874	896	0.97

Sequence Information

Coding Sequence: ATGGATCAGAGTGAAGTATGTGTTCTGTCATATGCATCTCATATAAAGGAAGAGGTAGAAGAGAAGAAGGACATTATTTCAATCTGTGGCTTGAAGCCAGTGAAGCAAGGTGCCTATGTTGGATCTGATATGTTAGTAGGAAAGGAACAAGAGGAGGACATTACTTCAATCTGTGGCTTGAAGTCAGTGAAGCAAGGCGTCTATGATGGCCCTGAGATCTTGGTAGGAAAGGAACAAAAACTAGAACTTGGGGAAGGACTTGTAAGCTGCCTGCCGACAGTTGGTGCCGGAAATGAAGGGACCAGTCCAGTGTTGAATCCACTGGGCACAGTGGTAGAGGAAGTGTGCATGTACATAACTGAAGGAGCAGAATGGCATCAGGGTGAAATGCCATTCCAAAATTGGCAAGAACATGTTATGATTCATTTGTGTCGTGTATGTGCTTTGGAAACGGAGAATCTAGTGTCTGTGTTTGGAGAAGAGGGCACAAAACTGAAATTGGCTGAAAAAATACACTGGCACTTACCTATTGAAGTAAGAGAAGATGATAAATTGCCAGTGACAGTGTGCTCTTCTTGCATATCCAAATTGAACTCCTGTCATGAACTGGCAATGTCATGTTTGAGGGCGAATGAAAAGCTGTGCAAACTCTTCAACATAGAGGAAACTAATTTGACTGATTATGGAGAAAAGAGTAATTTTGCAGCAACACAACTGCAGCGTAATAAAACATTGGATGCCCGTGATAAAAGAGTCCTTTTCAGAGAAACCTTACATAAGGCACCAAACATAGTAACAACACGAAGATCTTCAAAGCGACCTACACTACCTAGCCATCAATTGTCGACAGCAATGGAACTCTTGAAGAAAGTGAAGCAAGGACATGGAAAGAATATAAAAAGTACACAAAGGACATTGAACAATGGCCAGAAATCAAGCTCCATACTACTGAAGAGTGAGGTTCCTGAAATGGAACAGGCTGGAGATGGCAATAATGCTGACAGTGCTGATGTAAAGATGAACAGTATTCTCCATGATGATAACATGACACAAAATGTTGGAGAATCTGATCCCACTGACCCATTATATATTGGCACTGAGGAAACTGCATATAGTAGGCCACAGCGACAATTTGAGAGGAAGACATCTAAACTTTGGGACATCTTCATGAAATCCAAGATGGATGGAGTAATGCAAGATTTCACGAGAAGGGAAGATGAGACTGAAGATGAGAATAAGGAAAGGAAAAGAAGGGTACGTCATAAGGAATGGAAGTGTGAAACTTGTGGATATGTGTTACTAAGAAAAACTGCACTAATCATGCATCAGCAGCGAAAGCATGGCCCACAGAAGTTCTCTTGCAGCTACTGTGACAAAACATTTCGCAATGCAGTAGGAATGAAAGTACATGAACGATGTCACACAAAGGTTGCTGCCGAGAAAACAGAGCCAACATCTTACATATGTGAGTTCTGTGGAAAATCATTCCGAGGGAAGAAGACTTTGAAGGATCATCATCTAGCAAATCACAGTGATGAAAAGCCTTATAAATGTGATAAATGTGACAGAAACTATGGTTCCTTGGCTAGTCTTGGCATCCACAAGGCCACCCATTCCACAGAAACTCCATACCTTTGTGATCTGTGCGGTAAGAGCTTTAAGCATGTCAGCAATCTCCGTAGCCATAAGCGTTCACACAGGGATGATTCTGATAAGAATCGTCAGGTATGTGATGTTTGTGGTAAGGGATTCCGTTCCAGGTTTCACTTGTCAGAGCATATGAATGTGCATACTGGAAGACGTCCATACGCATGTAATGTGTGTGGCAAACACTTTCACAAAAAGATTCAGCTTCGGCAACATGGTTCAGCACATTCAGGAATGCAACCTTTCAAGTGTCATCTGTGTGGTGTCCGATTTAACCGCCGGGGAAACATGACACAGCACATAAAACGTCATGACAGAGTACGCAAATACACTTGCCGGGTATGCAATGAAGGCTTTGCTACGCTGGGAGCTGTCTTGAGTCATCGCAGAAAGCATACAAAAGAGGAGGTGGAAAACAGCATACGACAGCAGTCAGGATCGGTAGATGACCCAGAGCAAGTGGCTTACAAATGTGATGTATGTGGTAAGCTTCTTGCTAAAAAGGAATCTTTGGCCATCCACACGCGCTCCCACACAGGTGAGAAACCATTTGAATGTGGAGTATGTGGAAAACGGCTGAGCAACAAGGGTTCATTATCATATCACATGCGCTCTTTCCATACTGGGGAACGGCCCCACACCTGCCAATACTGTGGGGAAGGCTTCCTGTCTCGTGAAGCCCGGCTGGTACATGAACGAATTCACACGGGAGAAAAACCATATATATGTTCTGAATGTGGTATGGGTTTTCGATGCTCTAGTAACTTGGCTCAGCACGCTCGTGTTCATTCAGAGGCACGGCCTCATCCGTGTCCACATTGTGAAAAACGTTTCCAACGAAAGGGTGCGCTTGATGTACATATCCGCACTCACACAGGCGAGCGTCCTTATGCCTGTGATATGTGTGGTCGATGCTTCACTCAGAAGAATGACATGCTCAAACATCGCCGAACACATTCCCCAGATCGACCCTTTCCTTGTCCCCATTGTGGCCAGATATTTTCACAGAAACGTGAACTAGCTAAGCATCAGTCATTACACATTGCAACATCTCAAACAACAGTGCAACATGAAGTTGAGCATTCACCCCCTACACAAACAGTGCTCATTACAACAGATGACAGTCTCATCACATATCCAGAAATAAATGTACCAGTCATGGAAAATGCTCAGACACTCATATTGCACAGGTACTAG
Protein Sequence: MDQSEVCVLSYASHIKEEVEEKKDIISICGLKPVKQGAYVGSDMLVGKEQEEDITSICGLKSVKQGVYDGPEILVGKEQKLELGEGLVSCLPTVGAGNEGTSPVLNPLGTVVEEVCMYITEGAEWHQGEMPFQNWQEHVMIHLCRVCALETENLVSVFGEEGTKLKLAEKIHWHLPIEVREDDKLPVTVCSSCISKLNSCHELAMSCLRANEKLCKLFNIEETNLTDYGEKSNFAATQLQRNKTLDARDKRVLFRETLHKAPNIVTTRRSSKRPTLPSHQLSTAMELLKKVKQGHGKNIKSTQRTLNNGQKSSSILLKSEVPEMEQAGDGNNADSADVKMNSILHDDNMTQNVGESDPTDPLYIGTEETAYSRPQRQFERKTSKLWDIFMKSKMDGVMQDFTRREDETEDENKERKRRVRHKEWKCETCGYVLLRKTALIMHQQRKHGPQKFSCSYCDKTFRNAVGMKVHERCHTKVAAEKTEPTSYICEFCGKSFRGKKTLKDHHLANHSDEKPYKCDKCDRNYGSLASLGIHKATHSTETPYLCDLCGKSFKHVSNLRSHKRSHRDDSDKNRQVCDVCGKGFRSRFHLSEHMNVHTGRRPYACNVCGKHFHKKIQLRQHGSAHSGMQPFKCHLCGVRFNRRGNMTQHIKRHDRVRKYTCRVCNEGFATLGAVLSHRRKHTKEEVENSIRQQSGSVDDPEQVAYKCDVCGKLLAKKESLAIHTRSHTGEKPFECGVCGKRLSNKGSLSYHMRSFHTGERPHTCQYCGEGFLSREARLVHERIHTGEKPYICSECGMGFRCSSNLAQHARVHSEARPHPCPHCEKRFQRKGALDVHIRTHTGERPYACDMCGRCFTQKNDMLKHRRTHSPDRPFPCPHCGQIFSQKRELAKHQSLHIATSQTTVQHEVEHSPPTQTVLITTDDSLITYPEINVPVMENAQTLILHRY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -