Csec005284.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:715955-748579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.032 14.2 0.5 2 23 14 34 13 34 0.97 2 13 2.6e-05 0.00074 19.3 0.5 2 23 38 59 37 59 0.96 3 13 9.7e-06 0.00028 20.7 1.8 1 23 65 87 65 87 0.98 4 13 0.00044 0.013 15.5 7.8 1 23 93 115 93 115 0.98 5 13 1.6e-05 0.00045 20.0 3.2 1 23 121 144 121 144 0.97 6 13 0.01 0.28 11.2 1.1 1 23 150 172 150 172 0.98 7 13 9e-05 0.0026 17.6 1.4 1 23 178 200 178 200 0.95 8 13 3.8e-06 0.00011 22.0 2.0 1 23 206 229 206 229 0.97 9 13 5.3e-08 1.5e-06 27.8 1.0 1 23 237 259 237 259 0.99 10 13 2.3e-05 0.00067 19.5 0.2 1 23 265 287 265 287 0.97 11 13 5.5e-06 0.00016 21.5 2.3 2 23 294 315 293 315 0.96 12 13 6e-07 1.7e-05 24.5 2.5 1 23 321 343 321 343 0.97 13 13 2.9e-07 8.3e-06 25.5 1.0 1 23 349 371 349 371 0.99
Sequence Information
- Coding Sequence
- ATGTCTGTGAAGAATCTCAGAAGCAAGGAGAAGATGATGAAATGTGATGAATGTGGAGAGAATTTCTACAAGTGGGATCTCATCTACCACAGGCAGACTCACAGTTTACTGTCCTGTGCAATATGCAGCAAGACTTTTTCCCTGAAAAGTAAACTTGTATCACACATTAAAATTCACAGACCTCTGAAGGAATTTAGATGTACATCCTGCAATATGGTTTTCTATGCAAGCTCAGAATTAAAGCGACATATGAAGAGCCATGTTGTTCTGAAAGAACACAAGTGTGAGGCCTGTGATAAAATGTTCTTCTCAAATCATCACTTGAGAAATCATGTAAAGACTCATGCAAAAGAGCGTCCTTACACATGTGATGTTTGTCATAAAACTTACAAACGTAAATATGAGCTCACAGGACATAAGAAGATAGTTCACACTGCAGATAACAAGTATGAATGTGACATATGTGGGTTTTCAACTCTGTACAAAGCTAACTTAGATGTACATCACAAGAGACACCTTAATGAGTTCAGGTTTAATTGTGAGATCTGTAAGAAGGGGTTCTACACAAATTCAGAGTTACAAGGACACAAGAATTTCCACACAAACGAGAAGCCTCATCAATGTGATATATGTGGTAAGGCCTTCCTGTACAAGTCAAATTTGTGGAAACACCAGAAAAGCAACCATCCAGGAAAGGACTCAAAGCATTACCAGTGTAGTGTGTGTGGTAAGAATTTTCCATTTAACAGCTCATTGACATCACACATGAATACTCATACGAGGGAGCTGAAGTTCATTTGTGATGTGTGTGGAAAAGCCCTCTCCAGTAGCATGTCACTTAAGGCTCACAAGCGGTTACACACGGGGGAGAAACCCTGCATCTGCACTGTGTGTGGGAAGGCATTCACCAAGAGCTTCACTCTAAAAGTGCATCAGCTCACCCATACAGGACAGAAACCCCACTCGTGTGATATCTGTGGCAAGTCATTCACACAGCGCTCCACTTTGGTTGTGCACAAACGGTACCACACAGGGCAGAGACCTTATCAGTGTCAGATATGCAACAAGGGCTTTGTGTCCAAGACATTGCTCAACACCCACCAGAGGATTCATGACCAGGCATGCTTCTTCCACCTGTAA
- Protein Sequence
- MSVKNLRSKEKMMKCDECGENFYKWDLIYHRQTHSLLSCAICSKTFSLKSKLVSHIKIHRPLKEFRCTSCNMVFYASSELKRHMKSHVVLKEHKCEACDKMFFSNHHLRNHVKTHAKERPYTCDVCHKTYKRKYELTGHKKIVHTADNKYECDICGFSTLYKANLDVHHKRHLNEFRFNCEICKKGFYTNSELQGHKNFHTNEKPHQCDICGKAFLYKSNLWKHQKSNHPGKDSKHYQCSVCGKNFPFNSSLTSHMNTHTRELKFICDVCGKALSSSMSLKAHKRLHTGEKPCICTVCGKAFTKSFTLKVHQLTHTGQKPHSCDICGKSFTQRSTLVVHKRYHTGQRPYQCQICNKGFVSKTLLNTHQRIHDQACFFHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -