Csec007904.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:474393-488935[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.5e-05 0.0016 18.3 4.5 1 23 419 441 419 441 0.92 2 19 0.13 3.7 7.7 4.3 1 23 447 469 447 469 0.96 3 19 0.00023 0.0065 16.4 6.9 1 23 475 497 475 497 0.94 4 19 0.00015 0.0044 16.9 1.7 1 23 507 529 507 529 0.98 5 19 0.00018 0.0051 16.7 7.1 1 23 535 557 535 557 0.98 6 19 1.4e-05 0.00041 20.2 0.1 1 23 587 609 587 609 0.98 7 19 8.3e-08 2.4e-06 27.2 0.8 2 23 616 637 616 637 0.97 8 19 0.054 1.5 8.9 4.6 1 23 643 665 643 665 0.94 9 19 6.2e-05 0.0018 18.2 7.1 1 23 671 693 671 693 0.98 10 19 5.7 1.6e+02 2.5 5.8 2 23 699 717 698 717 0.82 11 19 8.6e-05 0.0024 17.7 0.2 1 23 723 745 723 745 0.98 12 19 1.7e-06 4.7e-05 23.1 0.7 2 23 752 773 752 773 0.97 13 19 1.2e-06 3.4e-05 23.5 0.7 1 23 779 801 779 801 0.99 14 19 0.00026 0.0075 16.2 4.9 1 23 807 829 807 829 0.96 15 19 0.00032 0.0093 15.9 1.3 1 23 835 857 835 857 0.94 16 19 9.9e-05 0.0028 17.5 0.6 1 23 863 885 863 885 0.97 17 19 0.18 5.1 7.3 2.5 1 23 891 913 891 913 0.93 18 19 0.0025 0.072 13.1 5.4 1 23 919 941 919 941 0.97 19 19 5.7e-05 0.0016 18.3 0.7 2 23 948 969 948 969 0.96
Sequence Information
- Coding Sequence
- ATGTGCTGCAAAATGGAATTTCCAGAAAAACGGCCTTCCGTGTCTAAGGAGTATTGTTGTGTCCCTCAGTGTTCTTCAAGAGCATCTCGAGATAGATGTCTAAGCTTTCACAGATTTCCCAAAAAGGGAAGGAATATAACTATATTGAATGAATCCGGAAAGAAAGAACAGTTTGAATTGAGAGAGTTGTGGGCACGAAACTTACGGCTTCAGAAACCAGTTTCTCCATATATGGTTGTTTGTTCAAGGCATTTTTCAAGAGCTGATTTCTTTTTGCCAGattttCCTGGAAGGAAACACTGTTTGAAGAAGAATGCTGTCCCATCCCAAAATCTCCCAGTTTCTTCTTGTAAGACATTAGCTGGATCAAAAGACAAAAGCAGGAGGAAACAGGAAAGGCCATCTCTTCCCAAAGAGGAAGGAGCAGTGGGTGTTATTCCACATCAAGATGAACATGAAATTCGTTTTGAGTATGTAGGTGTTGCAGAAGGGCAGTTTACATCTCAGGAACCTGGCTTATACACTGAGAATGTGGATAGCTTATTGATTAAAGAAGAAGTTCCTACAGAGCAGAATTGTGAAATGGTTTCTGAGAATGTGGTGGCATGTTCTGTCACAGAGGAATATCCTGTCACAAGAGAACCGGGagtgtgttttgaaaatgtggaaacatCTGATAGGAAGGAATATGGAACCTGTTTCAAGATTATTGACGTTAGATCAATCAAAGAAGAACCTGCTGTTGAAGAAAACATCATTGAAGACCCATTTGCTATGGCAGAAAGTAAAATTTTTGATGTCTTATCAATTAAGAAAGAACAAGATATCAAACAAGAGGAACATGAAACACAGTTCATGGAGACTGAAGAAGTAAATGGAGGAGCAGTTGAAAACCTAAATATTACAGCGAAAGAATCTTCTGAAAATATGGATGGTACGCAGATTAAGGAAGAACAGTCTGAAATGGAAGGGAACAGGAGCTGTATTTCAGTTACAGAGAACCAGTTTACTGCTCAGGACGGTAGGATTTGTTTTATGAATATCAGTCTTAAGGGAGAACAGATCGTTGATGACCACTTAATCACCACGGTTATGATAAAGGAAGAGGAACCGGGAGGCACCGAAACAAGTAAAGTGTTAAGttttagtGAACCTGCTGGTGATGTTATATCATCATCAACAGAGCAGTGTGATACATCCAGTGATCATTATGTCTTACAACCAGATAGGATTGAATGCTGTGAGAAGACACTTCATAAATGTGAGATGTGTGGGAAAACGTTTAAAAGATTTAGTAGTCTGAAGTCACATACTGTTTTCCATGCAGAGGAATATTTGCATGAATGCAGGTTGTGTCCTCATAGGTTTAAACTGCTTCGTGACTTGCAGAAACATTCCCTGTCTCATGTGGCAGAACTGTCTTTTAAGTGTGAAGTTTGTGGTAGGAAGTTCAAACACTCTCATCATCTCAAACAACATTCTGTCATTCATAAAAACGAAGAGGCAGGCAAACAGTCACACGAGTGCAAAATGTGTGGTAAAACATTTATGAAACGTATAAGGCTTAATGCACATGTCCGTATCCATACAGGCGAACTTCGTCATAAATGCAATGTATGTGGAAAAACCTTTCGATTACACTTTAGTCTCAAGAAACATTATCTTACCCATAACACAAAATCTAAAAAATGCCAAGTATGCCATAAAACTTTCAAATGTCTCAAAATACATGCTctaacacatttaaaaaatcGACCCTATGAATGCAAGATCTGCAATAATACATTTGCATCTTTAAGTGCTCTTAAGGCACACATTGGTACACATACAAAGGATCAGACTCCAGAATGTGAACTTTGCGGTAAAACATTTACAACCTTGAGTTCCCTTAAGAAACATATCCGTGTACATACAGGTGAGCATCCTTATGAATGTAAGATTTGCAGTAAAAACTTCAGATGTTCAAACCTCCTTAAGGAACATGTGCATATCCATACAGGCGAACATCATCATAAATGCAATGTATGTGGAAAAACCTTTCGATTACATTTTAATCTCAAGAAACATTATCTTACCCATAGCACAAAATCTAAAAAATGCCAAATATGCCATAAAACTTTCAGATGTCTCAaaattcatgctctaacccatTTAAAAAATCGACCTTATGAATGTAAGATCTGCAATAATACATTTGCATCTCTAACTGCTCTTAAGTCACACATTGGTACGCATACAAAGAACCAGACTCCAGAATGTGAACTTTGCGGTAAAACATATACAACCTTTAGTTCCCTTAAGACACATATCCGTGTACATACAGGTGAGCATCCTTATGAATGTAAGATTTGCAGTAAAAACTTCAGACGTTTAAGTGCCCTTAAGGAACATGTGCGTATCCATACTGGTGAAAGACCATACCAGTGCAAGATATGCAACAAAACTTTTAGGTACAGAAGAACTTTCAGGGCGCATGCTCATCTCCATTCAgatgaaagaaaatttaaatgcaGAGTGTGTGGTAAAGGTTTCCAGCTTCAAAGTAGTCTCAAGAAACATTCTGTTAgtcacacagaaaataaatcttACAACTGCATGCTTTGTAATGAAAGTTTTAAAGATCTTCGTGATCTCAAGAAACATGTTCTTGTTCATATGGGTGAAGAGATCCATGAGTGCATAATATGTGACAAAAGGTTTAGATGTTTAGTATCGCTGAAGTCACACATTCTCATTCACACAGGTGAACGACCATACaaatgtgatgtgtgtaataaaacATTTCGATGTAAGTCAACTCTTAAGTCACATTCCTTGAGTCATTCAAAGATAGGCCCTAATGAATGCGGTATTTGCAAGAAGTCATTTAGGAAGCCAAAGTATTTAAAGATACACACCTTAATCCATCAGTGGCGGCTCATCCAATAG
- Protein Sequence
- MCCKMEFPEKRPSVSKEYCCVPQCSSRASRDRCLSFHRFPKKGRNITILNESGKKEQFELRELWARNLRLQKPVSPYMVVCSRHFSRADFFLPDFPGRKHCLKKNAVPSQNLPVSSCKTLAGSKDKSRRKQERPSLPKEEGAVGVIPHQDEHEIRFEYVGVAEGQFTSQEPGLYTENVDSLLIKEEVPTEQNCEMVSENVVACSVTEEYPVTREPGVCFENVETSDRKEYGTCFKIIDVRSIKEEPAVEENIIEDPFAMAESKIFDVLSIKKEQDIKQEEHETQFMETEEVNGGAVENLNITAKESSENMDGTQIKEEQSEMEGNRSCISVTENQFTAQDGRICFMNISLKGEQIVDDHLITTVMIKEEEPGGTETSKVLSFSEPAGDVISSSTEQCDTSSDHYVLQPDRIECCEKTLHKCEMCGKTFKRFSSLKSHTVFHAEEYLHECRLCPHRFKLLRDLQKHSLSHVAELSFKCEVCGRKFKHSHHLKQHSVIHKNEEAGKQSHECKMCGKTFMKRIRLNAHVRIHTGELRHKCNVCGKTFRLHFSLKKHYLTHNTKSKKCQVCHKTFKCLKIHALTHLKNRPYECKICNNTFASLSALKAHIGTHTKDQTPECELCGKTFTTLSSLKKHIRVHTGEHPYECKICSKNFRCSNLLKEHVHIHTGEHHHKCNVCGKTFRLHFNLKKHYLTHSTKSKKCQICHKTFRCLKIHALTHLKNRPYECKICNNTFASLTALKSHIGTHTKNQTPECELCGKTYTTFSSLKTHIRVHTGEHPYECKICSKNFRRLSALKEHVRIHTGERPYQCKICNKTFRYRRTFRAHAHLHSDERKFKCRVCGKGFQLQSSLKKHSVSHTENKSYNCMLCNESFKDLRDLKKHVLVHMGEEIHECIICDKRFRCLVSLKSHILIHTGERPYKCDVCNKTFRCKSTLKSHSLSHSKIGPNECGICKKSFRKPKYLKIHTLIHQWRLIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -