Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:234080-246405[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.2e-06 9.3e-05 22.2 5.2 1 23 85 107 85 107 0.98

2 13 3.3e-06 9.5e-05 22.2 2.3 1 23 113 135 113 135 0.97

3 13 2e-07 5.7e-06 26.0 4.4 1 23 141 163 141 163 0.97

4 13 7e-06 0.0002 21.1 3.0 1 23 169 191 169 191 0.97

5 13 0.00036 0.01 15.7 7.0 1 23 197 219 197 219 0.97

6 13 7.5e-06 0.00021 21.1 1.9 1 23 225 247 225 247 0.97

7 13 7e-06 0.0002 21.1 5.5 1 23 253 275 253 275 0.97

8 13 1.6e-06 4.6e-05 23.1 6.0 1 23 281 303 281 303 0.97

9 13 5.9e-06 0.00017 21.4 3.2 1 23 309 331 309 331 0.97

10 13 1.5e-05 0.00044 20.1 3.9 1 23 337 359 337 359 0.97

11 13 0.00012 0.0034 17.3 6.9 1 23 365 387 365 387 0.97

12 13 5e-05 0.0014 18.4 1.2 3 23 395 415 393 415 0.97

13 13 3.1e-06 8.8e-05 22.3 7.2 1 23 421 443 421 443 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.2e-06	9.3e-05	22.2	5.2	1	23	85	107	85	107	0.98
2	13	3.3e-06	9.5e-05	22.2	2.3	1	23	113	135	113	135	0.97
3	13	2e-07	5.7e-06	26.0	4.4	1	23	141	163	141	163	0.97
4	13	7e-06	0.0002	21.1	3.0	1	23	169	191	169	191	0.97
5	13	0.00036	0.01	15.7	7.0	1	23	197	219	197	219	0.97
6	13	7.5e-06	0.00021	21.1	1.9	1	23	225	247	225	247	0.97
7	13	7e-06	0.0002	21.1	5.5	1	23	253	275	253	275	0.97
8	13	1.6e-06	4.6e-05	23.1	6.0	1	23	281	303	281	303	0.97
9	13	5.9e-06	0.00017	21.4	3.2	1	23	309	331	309	331	0.97
10	13	1.5e-05	0.00044	20.1	3.9	1	23	337	359	337	359	0.97
11	13	0.00012	0.0034	17.3	6.9	1	23	365	387	365	387	0.97
12	13	5e-05	0.0014	18.4	1.2	3	23	395	415	393	415	0.97
13	13	3.1e-06	8.8e-05	22.3	7.2	1	23	421	443	421	443	0.98

Sequence Information

Coding Sequence: ATGACAAATGCGGTATTTCTTGATTTACAGAACACTGCAGATTTCGAGAGAGTATATGTAAGTAGCCTGTGTGACGAGATATGCccagcagcttctcaagatgcaTATCAAACCATCAGCGTGAAAGACGAGGTAACGTCACATACAGAAGCAGAGGAGGATCCTCTCGCAATAACACTTCCAGGAGAAATGAAGTCTCCAGCTGAGACTAGTCTACATCATCTTCAACCTGTGCTTGGTAAGGAGCGGCCATATTCCTGTCAAGtctgtaataagtcatttagacATCCCTGCGATCTGACGAcacaccaacgcatacatagtggggagcggccattttgttgtgacgtGTGCAATAATTCATTCAAACAACGCGGTAATCTAAAtgcacatcaacgcatacatagtggagagcggccattttgttgtgacgtGTGCAATAAGTCATTCAGACAACGCGGTAATCTAAAGaaacatcaacgcatacataatgGGGAGCgtccattttgctgtgatgtgtgcaATAAGTCGTTCAGTCAGCAGAATGGTCTGAAAACACACCAaagcatacatagtggggaacggccattttgttgtaacgtgtgtaataagtcattcattcGTTACTGTGATCTGAAGAGACACCGGaccatacatagtggggagcgaccattttgctgtgacgtgtgtaataagtcatttgcCGAACGCGGTCTTCTGAAGAcacaccaacgcatacatagtgtggagcggccattttgttgtgacgtGTGCAATAATTCATTCAGACATCGCAGTAATCTAAAggcacatcaacgcatacatagtggggagcggccattttgttgtgacgtGTGCAATAAGTCATTCATACGACACAGCAATCTAaagacacatcaacgcatacatagtggggagcggccattttgttgtgacgtGTGCAATGAGTCATTCATACGACACGGCAATCTAAAGATACATCAAcgtatacatagtggggagcgtcCATTTTGCTGTGGTGTGTGTAATAAGTCGTTCACTCAGCGGAATTCTCTGAAAACACACCAaagcatacatagtggggaacggccattttgttgtaacgtgtgtaataagtcatttattcGTTGCCGTGATCTGAAGAGACACCGGAGCATACATGGTGGGGAACGGCCATTTGGCTGTGACGTGTGTAAGAAGTCATTTGCCGAACGcggtcatctgaagacacaccaactcatacatactggggagcggccattttgttgtgacatGTGTGATAAGTCATTCAGACAGCTGGTTCATCTAAAGAGACACCAACGCAAACATAGTGAATgcggccattttgttgtgacgtGTGTAGTAAATCGTTCACTCAAAAGAGTGTTCTGA
Protein Sequence: MTNAVFLDLQNTADFERVYVSSLCDEICPAASQDAYQTISVKDEVTSHTEAEEDPLAITLPGEMKSPAETSLHHLQPVLGKERPYSCQVCNKSFRHPCDLTTHQRIHSGERPFCCDVCNNSFKQRGNLNAHQRIHSGERPFCCDVCNKSFRQRGNLKKHQRIHNGERPFCCDVCNKSFSQQNGLKTHQSIHSGERPFCCNVCNKSFIRYCDLKRHRTIHSGERPFCCDVCNKSFAERGLLKTHQRIHSVERPFCCDVCNNSFRHRSNLKAHQRIHSGERPFCCDVCNKSFIRHSNLKTHQRIHSGERPFCCDVCNESFIRHGNLKIHQRIHSGERPFCCGVCNKSFTQRNSLKTHQSIHSGERPFCCNVCNKSFIRCRDLKRHRSIHGGERPFGCDVCKKSFAERGHLKTHQLIHTGERPFCCDMCDKSFRQLVHLKRHQRKHSECGHFVVTCVVNRSLKRVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -