Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:601371-620663[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.04 1.1 9.3 0.5 8 23 253 268 252 268 0.94

2 14 0.00039 0.011 15.7 7.3 1 23 274 296 274 296 0.97

3 14 4.8e-06 0.00014 21.7 0.8 1 23 302 324 302 324 0.98

4 14 3.4e-07 9.6e-06 25.3 3.7 1 23 330 352 330 352 0.98

5 14 1.7e-06 4.9e-05 23.0 3.4 1 23 358 380 358 380 0.97

6 14 4.3e-05 0.0012 18.7 4.3 1 23 386 408 386 408 0.97

7 14 1.2e-05 0.00034 20.4 3.2 1 23 414 436 414 436 0.97

8 14 1.5e-06 4.2e-05 23.3 2.1 1 23 442 464 442 464 0.97

9 14 1.4e-07 4.1e-06 26.5 1.3 1 23 470 492 470 492 0.98

10 14 4.5e-05 0.0013 18.6 3.2 1 23 498 520 498 520 0.97

11 14 5.2e-05 0.0015 18.4 8.5 1 23 526 548 526 548 0.97

12 14 1.2e-05 0.00033 20.4 2.6 1 23 554 576 554 576 0.95

13 14 4.9e-06 0.00014 21.6 4.1 1 23 582 604 582 604 0.95

14 14 9.1e-05 0.0026 17.6 8.0 1 23 610 632 610 632 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.04	1.1	9.3	0.5	8	23	253	268	252	268	0.94
2	14	0.00039	0.011	15.7	7.3	1	23	274	296	274	296	0.97
3	14	4.8e-06	0.00014	21.7	0.8	1	23	302	324	302	324	0.98
4	14	3.4e-07	9.6e-06	25.3	3.7	1	23	330	352	330	352	0.98
5	14	1.7e-06	4.9e-05	23.0	3.4	1	23	358	380	358	380	0.97
6	14	4.3e-05	0.0012	18.7	4.3	1	23	386	408	386	408	0.97
7	14	1.2e-05	0.00034	20.4	3.2	1	23	414	436	414	436	0.97
8	14	1.5e-06	4.2e-05	23.3	2.1	1	23	442	464	442	464	0.97
9	14	1.4e-07	4.1e-06	26.5	1.3	1	23	470	492	470	492	0.98
10	14	4.5e-05	0.0013	18.6	3.2	1	23	498	520	498	520	0.97
11	14	5.2e-05	0.0015	18.4	8.5	1	23	526	548	526	548	0.97
12	14	1.2e-05	0.00033	20.4	2.6	1	23	554	576	554	576	0.95
13	14	4.9e-06	0.00014	21.6	4.1	1	23	582	604	582	604	0.95
14	14	9.1e-05	0.0026	17.6	8.0	1	23	610	632	610	632	0.98

Sequence Information

Coding Sequence: ATGCCAAGAATTttacagagagctgaagaaatatttcctgccgTAAGAGAAAgcatgAGCTATACAAATTCAGAGAATGTTTTAGTGGGTCAACATAGTGAGATATACCCAGCATACCATGATGGAAATCAGGCCATGAGCATAAGAGATGAAGTTTCAGACACAGAAGAGAAACCAGATCATGTGCCAGTAGCAGTTGaggaaataaaggctgaacctgagAACTATGCAAATTTAGAGAAGGTACTAGTGGGTCCACATGGTGAGATGTACGCAGCATGGCATCATGCAAACGAGGCAATGAATGTTAAAATTGAGGAAGTCTCAGATGCAGCAGAAGAGGATCCTCTGCGAATAACAGTTCAGGAAAtgaaggctgaacctgagTCAGCCCCACAAAATATCATACATGATAAACAAGTTCCAAGGTTACAAAAgtttctgcattctcttgcaacaagacTGCCAAGAATTGTgctacagagagctgaagaaacataTCCTGCTGTGAAAGAAAGCATGAGCTACACAAATACAGATAAAgttttagtgggtccatatggtgagacatacccagcaTGTTGTAATGGAAGTCAGGAcatgaatattaaaactgaagaaGACTCAGACGCAGAAAAGAAAGCAGATCCTCTCccaataacatttccagaaGTGAAGggtgaacctgagagtACTTTGAATGAACTTCGACCTGTACATAGTGAGGAGCAGCCATATTCCCGTGATGAGCAtagtgaatcattcagtcaaCAGTTTAATCTGaggacacatcagctcatacacagtggggagcaGACATTTTTCTGCAGcatgtgtaataaatcatttagTTGTCTGAGTCATCTGAatagacatcagcgcatacatagtggggtaCGGCCATTtagctgtgatgtgtgtagCAAGTCATTCACTGAGCTTGGTGACTTGAAGAGACACAAGCGCATACATACTGGCGAACGACCATTTgtctgtaatgtgtgtaataagtcattttgTGATCAGAGTAAtatgaagacacatcagcgcatacatagtggggaacgGCCATTtagctgtgatgtatgtaataagtcattctgTCAGCAAAGTGATTTGAAGAAACACAAGATCATACATACTGGGGAACGGCCATTTTTCTGTGaattatgtaataagtcattcagtcgtaAGGGATGCATGATGAaccatcaacgcatacatagtggtgagcggccattttgctgtggtgtttgtaataagtcattcaatcAGCTTGGTGATTTGAAGAAACATCGGCGCCTACATACCGATAATCAGCCATTtaactgtgatgtatgtaataagtcattccgtCAGCAGGATTATCTGAAGAAACACAAGCTTGTACATACTGGGGATCGACCATTTATCTGTGActtatgtaataagtcattcagtcaaaAGGGATCCCTGAAGAaccatcagcgcatacatactggggatCGACCATTTATCTGTGACTTATGCAATAAGACGTTCAGTGAAAAGAGATCCTTGAAGGACCATCAGTGTATACATACTGgtgagcggccattttgctgtgatacttgtaataagtcatttaaaaATCAGCGTCATCTAAAAAGGCATAATCGCATACATACTGGAGAACGGCCATTtatctgtaatgtgtgtaataagtcattccatCAGCAGAGTGATCTGAGGAAACACAAGGTCATACATACTGGGGAACGACCATTTCTCTGTGActtatgtaataagtcattcagacgTAAGGGGTGCCTGATGagacatcaacgcatacatagtggggaaagGCCATTTATCTGTAATGTGTGTGATAAGTCATTCCATCATGAGCATAATTTCAAGGCACATCAGCGAAAACATTTTGatttgtgtaataaatcataG
Protein Sequence: MPRILQRAEEIFPAVRESMSYTNSENVLVGQHSEIYPAYHDGNQAMSIRDEVSDTEEKPDHVPVAVEEIKAEPENYANLEKVLVGPHGEMYAAWHHANEAMNVKIEEVSDAAEEDPLRITVQEMKAEPESAPQNIIHDKQVPRLQKFLHSLATRLPRIVLQRAEETYPAVKESMSYTNTDKVLVGPYGETYPACCNGSQDMNIKTEEDSDAEKKADPLPITFPEVKGEPESTLNELRPVHSEEQPYSRDEHSESFSQQFNLRTHQLIHSGEQTFFCSMCNKSFSCLSHLNRHQRIHSGVRPFSCDVCSKSFTELGDLKRHKRIHTGERPFVCNVCNKSFCDQSNMKTHQRIHSGERPFSCDVCNKSFCQQSDLKKHKIIHTGERPFFCELCNKSFSRKGCMMNHQRIHSGERPFCCGVCNKSFNQLGDLKKHRRLHTDNQPFNCDVCNKSFRQQDYLKKHKLVHTGDRPFICDLCNKSFSQKGSLKNHQRIHTGDRPFICDLCNKTFSEKRSLKDHQCIHTGERPFCCDTCNKSFKNQRHLKRHNRIHTGERPFICNVCNKSFHQQSDLRKHKVIHTGERPFLCDLCNKSFRRKGCLMRHQRIHSGERPFICNVCDKSFHHEHNFKAHQRKHFDLCNKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -