Csec011642.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:1296435-1311804[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.055 1.6 8.9 0.1 1 23 110 132 110 132 0.92 2 21 1.1e-06 3e-05 23.7 1.1 1 23 138 160 138 160 0.97 3 21 0.0014 0.039 13.9 0.4 1 23 166 188 166 188 0.97 4 21 6.3e-05 0.0018 18.1 2.1 1 23 194 216 194 216 0.96 5 21 0.00073 0.021 14.8 4.2 1 23 222 244 222 244 0.96 6 21 3.1e-06 8.9e-05 22.2 1.0 1 23 250 272 250 272 0.97 7 21 6e-06 0.00017 21.4 5.4 1 23 278 300 278 300 0.98 8 21 9.9e-05 0.0028 17.5 0.8 2 23 307 328 306 328 0.95 9 21 2.6e-06 7.4e-05 22.5 1.0 1 23 334 356 334 356 0.97 10 21 0.00042 0.012 15.5 1.7 1 23 362 384 362 384 0.96 11 21 0.00048 0.014 15.4 1.7 1 23 390 412 390 412 0.96 12 21 0.0083 0.24 11.5 2.5 1 23 418 440 418 440 0.90 13 21 0.00016 0.0046 16.8 0.2 1 23 634 656 634 656 0.96 14 21 9.5e-06 0.00027 20.7 0.5 1 23 662 684 662 684 0.96 15 21 0.046 1.3 9.1 0.7 5 23 694 712 692 712 0.93 16 21 1.3e-06 3.7e-05 23.4 1.3 1 23 718 740 718 740 0.97 17 21 0.001 0.029 14.3 1.1 1 23 746 768 746 768 0.96 18 21 0.0009 0.026 14.5 1.9 1 23 774 796 774 796 0.97 19 21 0.0001 0.003 17.5 3.3 1 23 802 824 802 824 0.97 20 21 0.00034 0.0097 15.8 4.0 1 23 830 852 830 852 0.96 21 21 1.1e-05 0.00032 20.5 1.5 1 23 858 880 858 880 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAGGAAATGAACACCTTAGATCATGGAGTATGTTTTGAAGTTCCTTCAGTaagaggagaaggagaagcATTTGCATTACGGGATTATGGAGGTTGTTTGAAAGACATGGGAGGAAGCAGTTTGAACTTGGTTTCCAGTCATCAGAGTGGGATGAACTTGGTTCCTTCTCAGCCAAGTGGGTTGAGTGTTGTTTCTGGCCAGCAGAGTAGTTTGAACTTAGCTTCTGGTCAGCAAGGCAGTGATAGACGTATAGCTGCACCAACACAGCAAAATATATCCATGGGCCATGGAGTTCAGTCATTGACTCCTACAGGAGGGTCATATGATTGTAATGTGTGTGGACTACAGTTTCAATTTCTACCTGATTTAAGGACACACTCTGTTATTCATGTGCGGCAGCGTCCTCATGAATGCAGTACCTGTGGGAAAAGGTTCATATTTCCAAGTGATCTGAAGAGACACATTCTTATTCATACAGGAGAACGTCCTTTTGAATGTAATGTATGTGGTAATAAGTTTAGAAAACTAAATGTTTTGAAGCGACATGCACTGATACATACTGGGGAACGTCCACATGAGTGCACAGTATGCCCGAGGAAGTTCAGAGACATAACTGACCTGAAGAAACACATGCTTTTCCACACAGGTGAACGTCCGCATGAGTGTAATCTTTGTGATAAGAAGTTTACGTTGATATCACACCTCAAAAAGCATTCACTTATTCATACAGGTGAACGTCCTCACGAGTGTAGTGAATGTGGTAAGACATTTATACGTGTAAGTGACCTCAAAACACATACCTTGATACATACAGGGGAACGTCCACATGAGTGCAGTGTGTGTGGAAAGAAATTCAAATTATCGTCTCATCTTAGGAAACACACACGTATTCACACAGGAGAACGTCCACAGGAATGTAATGTATGCAGTAAGAAATTTACTTTTCCTAGTGATCTGAAAACACATTCTCTTATTCATACAGCAGAGCGACCACATGAATGTAATATCTGTGGTAAAAGATTTACTTTTCCTGGTGACCTAAAGACACACACACTAATTCACACAGGAGAACGGCCACACGAATGCTCAGTATGTGGGAAGAAGTTCATGCGAGTAACTCTTCTCAAGAAACACTCTCTGATCCACACAGGACAGCGACTTCATGAGTGCAATGCTTGTGACAGAACGTTTACACAGTTAACTCTTCTGCGGAAACATTCTTTGATTCACAGAGGAGCGCGGCCACATGAATGCATCATATGTGGGAAGAAGTTTACATTTTCTAAAGAATTAagaacacattcattcattcatgaaaaTCAGCATCAGCAGCAGCAACTCCAACAACTTCATAACCAGCAACATCAACTGCAGCAGCAACCACTTTTGCAGCAACAGCCACTTCAGCAGCAGCACCCCCCTCaccagcagcaacaacaaaatCAGCTGCAGCTGAATCAACAACTACATCAGCATGTTCAACAGCAACACCAGCAGCTGAATCAGCAGCAACACCAGGAGCCCAATCAGCAACAACACCAGCAGCTGAATCAGAAGCAACACCAGGAGCCAGATCAGCAACACCAGCAGCTGAATCAGCAGCAACACCAGGAGCCCAATCAGCAACAACACCAGCAGCTGAATCAGAAGCAACACCAGGAGCCAGATCAGCAACACCAGCAGCAGCTGAATCAGAAGCAACACCAGGAGCCAGATCAGCAACACCAGCAGCTGAATCAGCAGCAACACCAGGAGCCGAATCAGCAACATCAGCTGCTGAATAAGCAACAATACCAGCAGCCAACTCAAGCACAACACCAGCAGCCGAATCAGCAACATTCCCAGCAGCCAAATCAACAGCAACCACGTACACTGCAGTCTCCTCGACAGTCATATGATTGTAATGTATGTGGAAAACAGTATCCATCTTCTACTGAATTAAAATCACATTCACTAATTCATGTAGGGCAGCGACCACACGAATGTGATGTGTGCGGTAAACGATTTGCATTTCCTAGTGATTTAAAAGCACATTCTCTGTCCCACACAGGGGAACGACCACATGGATGTATTGTATGTGGTAAAAAGTTCAGCAAGCTTAATGTACTGAAAAGACATTCGCTGATTCACATGGGGGAGCGACCTCATCAGTGTGATGAATGTGGTAAAAGATTTAGAGAATCGAGTGATCTCAAGAAACATGCACTTGTCCATTCTGGACAACAGCCTCATGAATGTGGTGTGTGTAAGAAAAAGTTTGTTCTAATGTCTCAGCTGAAGAAGCATGCCGAAATTCATACTGGAATTCGACCCCATGAATGTAATGTGTGCAATAAAAAGTTCTTACGATTATCAGACCTCAATACGCATACCCTCATACACACTGGTGAACGTCGACATGAATGTGCTGTATGTGGAAAGAAGTTTACACTTGTTTCTCATCTTAAAAAGCATTCTCGAATCCACACCGGAGATAGGCCTCACGAATGCACAGTATGTCATCGAAAATTCACGTTTCCTAGTGACCTGAAAACTCACTCTCTTATCCACACAGCAGAACGGCCTCATGAATGTACTATATGTGGTAAGAAGTTTATATTTCGTAGTGGTCTTAAAGTACACACACAGGTGCATGCTGGTGAATGA
- Protein Sequence
- MEEEMNTLDHGVCFEVPSVRGEGEAFALRDYGGCLKDMGGSSLNLVSSHQSGMNLVPSQPSGLSVVSGQQSSLNLASGQQGSDRRIAAPTQQNISMGHGVQSLTPTGGSYDCNVCGLQFQFLPDLRTHSVIHVRQRPHECSTCGKRFIFPSDLKRHILIHTGERPFECNVCGNKFRKLNVLKRHALIHTGERPHECTVCPRKFRDITDLKKHMLFHTGERPHECNLCDKKFTLISHLKKHSLIHTGERPHECSECGKTFIRVSDLKTHTLIHTGERPHECSVCGKKFKLSSHLRKHTRIHTGERPQECNVCSKKFTFPSDLKTHSLIHTAERPHECNICGKRFTFPGDLKTHTLIHTGERPHECSVCGKKFMRVTLLKKHSLIHTGQRLHECNACDRTFTQLTLLRKHSLIHRGARPHECIICGKKFTFSKELRTHSFIHENQHQQQQLQQLHNQQHQLQQQPLLQQQPLQQQHPPHQQQQQNQLQLNQQLHQHVQQQHQQLNQQQHQEPNQQQHQQLNQKQHQEPDQQHQQLNQQQHQEPNQQQHQQLNQKQHQEPDQQHQQQLNQKQHQEPDQQHQQLNQQQHQEPNQQHQLLNKQQYQQPTQAQHQQPNQQHSQQPNQQQPRTLQSPRQSYDCNVCGKQYPSSTELKSHSLIHVGQRPHECDVCGKRFAFPSDLKAHSLSHTGERPHGCIVCGKKFSKLNVLKRHSLIHMGERPHQCDECGKRFRESSDLKKHALVHSGQQPHECGVCKKKFVLMSQLKKHAEIHTGIRPHECNVCNKKFLRLSDLNTHTLIHTGERRHECAVCGKKFTLVSHLKKHSRIHTGDRPHECTVCHRKFTFPSDLKTHSLIHTAERPHECTICGKKFIFRSGLKVHTQVHAGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -