Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:73683-89643[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.8e-05 0.0011 18.8 1.4 1 23 203 225 203 225 0.98

2 16 1.8e-05 0.00051 19.9 1.1 1 23 231 253 231 253 0.98

3 16 5e-06 0.00014 21.6 2.4 1 23 259 281 259 281 0.98

4 16 1.1e-05 0.0003 20.6 0.8 1 23 287 309 287 309 0.98

5 16 5.4e-06 0.00015 21.5 1.0 1 23 315 337 315 337 0.98

6 16 3e-06 8.5e-05 22.3 4.3 1 23 343 365 343 365 0.98

7 16 1.5e-05 0.00044 20.1 3.3 1 23 371 393 371 393 0.99

8 16 5.9e-05 0.0017 18.2 3.3 1 23 399 421 399 421 0.98

9 16 2.5e-05 0.00072 19.4 3.6 1 23 427 449 427 449 0.98

10 16 1.5e-06 4.3e-05 23.2 1.0 1 23 454 476 454 476 0.98

11 16 0.014 0.4 10.7 0.1 1 23 482 504 482 504 0.98

12 16 1.6e-06 4.7e-05 23.1 1.3 1 23 510 532 510 532 0.95

13 16 7.1e-08 2e-06 27.4 0.9 1 23 538 560 538 560 0.98

14 16 3.3e-08 9.5e-07 28.4 1.1 1 23 566 588 566 588 0.98

15 16 3.1e-06 8.9e-05 22.2 1.1 3 23 596 616 594 616 0.96

16 16 1.7e-07 4.9e-06 26.2 1.7 1 23 622 644 622 644 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.8e-05	0.0011	18.8	1.4	1	23	203	225	203	225	0.98
2	16	1.8e-05	0.00051	19.9	1.1	1	23	231	253	231	253	0.98
3	16	5e-06	0.00014	21.6	2.4	1	23	259	281	259	281	0.98
4	16	1.1e-05	0.0003	20.6	0.8	1	23	287	309	287	309	0.98
5	16	5.4e-06	0.00015	21.5	1.0	1	23	315	337	315	337	0.98
6	16	3e-06	8.5e-05	22.3	4.3	1	23	343	365	343	365	0.98
7	16	1.5e-05	0.00044	20.1	3.3	1	23	371	393	371	393	0.99
8	16	5.9e-05	0.0017	18.2	3.3	1	23	399	421	399	421	0.98
9	16	2.5e-05	0.00072	19.4	3.6	1	23	427	449	427	449	0.98
10	16	1.5e-06	4.3e-05	23.2	1.0	1	23	454	476	454	476	0.98
11	16	0.014	0.4	10.7	0.1	1	23	482	504	482	504	0.98
12	16	1.6e-06	4.7e-05	23.1	1.3	1	23	510	532	510	532	0.95
13	16	7.1e-08	2e-06	27.4	0.9	1	23	538	560	538	560	0.98
14	16	3.3e-08	9.5e-07	28.4	1.1	1	23	566	588	566	588	0.98
15	16	3.1e-06	8.9e-05	22.2	1.1	3	23	596	616	594	616	0.96
16	16	1.7e-07	4.9e-06	26.2	1.7	1	23	622	644	622	644	0.98

Sequence Information

Coding Sequence: ATGCAGTCTCTTGAAACAAGAGTGCCAAAAATTATACtgcagagagctgaagaaatgTATCCTCCCCTGAAGGAAGGCTTGCTGAACAGTGATTCAGTCAAAGTAGAAAATGGGATGGATGTTCTGAGTGAAGGAGATTCTGCTGACACAAAGAGCAACAATGAGGTTTACACGCCATTGTTAACATTTCCCATGCagaaggctgaacctgagCAGACCATCAGTGCAGTCAAGCTAGAAGATGAAGTAGATGTTCCAAAAGAATATTGCTTTGACATGGAAACTGATAAAGCTTACATACCATCAACATTTTCCATGCAAAAGGCTAAACCTAAGAACTGTATGGATTTCCTGACGGTTGAGCCTGGATCAAGTAGCGAGGCATGTCCAACATCTTCTCATGATGGGAATCAGATCATTGACATAAAAGTTGAGGTCTCAGACACTCAGGATGTGGAGGATCCGCTGCTAATAACATTAtcagaaataaaggctgaacatGAGAGCATTCTACATCATCAGCTGATAGATGGAGCAGAGCAGCCATATCTCAGCAGTAAGAGTGATCTTATTGTACACAAATGCATACCCATTGGGAAGCAGCCATATtcgtgtgatgtgtgtaataaaacATTCAGCTTCAAGAATGTTCTGACCATACACAAACGAATCCATAGTGGGGAGAGACCATATTCGTGTGATATGTGTACTAAATCATTCATTGCTACGAGTACTCTGAATAGACATCAACTGACACATAACGGGAAGCGCCCATATTCTTGTGATGTATGTAGTAAATCATTCAGGAGGAAAGATTCTTTGCATATGCATGCACGTGTACACACTGGGGAGCGGCCATATTCCTGTGATATGTGTAACAAGACATTCAGTATTAGGGGAGTCTTGAAGAGACATTTacgcatacacagtggggaaCGCCCTTATtgttgtgatgtgtgtaataaagcATTCAGCAGGCCGAGCATTCTCAGGGCACATCAACGCAttcatagtggggagcggccgtATTCATGCCATGTCTGTAAGAAGTCATTTAGAATGCAAAGTAACATGAAAGAACATCAACGTATACATAATGGAGAACGTCCTTACTCTTGCGATGTATGTAATATGTCATTTGGCTTTCTTAGTAATTTGAAGAGACATCAGTGCACACATATTGAAGAGGGACCATattcctgtgatgtgtgtaagaaGTCGTTCAGACTGGAGAGTAATTTGAAGGAGCATAAGTGCATACATAGTGTGAAGCGTCAGTATTCCTGTGATAGATGTAATGCGTCATTCTGTTATGTGAGTAATTTAAAGAAACATCAGCGTATACACAATGAATATCCTTATTCTTGTGgtgtatgtaataaatcatttggTTATCAGAGTAGTTTTAAGGCACATCAACGAATACATAGTGGGGAACGACCATATTCCTGTGGTGTATGTAATGCATCATTCAGAGTTGTAAGTATCCTGAAGGCTCATGAACGGATACATGATGGAGAGCGTCCATATTTGTGTGGTGTATGCAAGAAGTCATTCAGTTACCAGAGCAATTTGAAGTCCCACCAAAGCATACATGTCGGGGAACGTCCCTATTCCTGTGAcatatgtaataaatcatttgcCAGGCAAGACAATCTCAAGACACATCAAGGTACTCATACTGGAGAGCGTCCATATttttgtaatgtgtgtaataaatcattcaacAGACCGAGTAGTCTAAAGGCACACCAGCGTGTTCATAGTGAGGAGCGTTCTTATGGTTGTgatgtgtgcaataaatccttTACTACACAGCGTAACTTGACGAGACATAAAGATATACATGGTGTGAAGGGTCCTTATTCCTGCGATGATTGTAGTAAGTCATTCAGTTACCAGAGTAGTCTGAAGGTTCATCGGCGCATTCATACTGGGTAG
Protein Sequence: MQSLETRVPKIILQRAEEMYPPLKEGLLNSDSVKVENGMDVLSEGDSADTKSNNEVYTPLLTFPMQKAEPEQTISAVKLEDEVDVPKEYCFDMETDKAYIPSTFSMQKAKPKNCMDFLTVEPGSSSEACPTSSHDGNQIIDIKVEVSDTQDVEDPLLITLSEIKAEHESILHHQLIDGAEQPYLSSKSDLIVHKCIPIGKQPYSCDVCNKTFSFKNVLTIHKRIHSGERPYSCDMCTKSFIATSTLNRHQLTHNGKRPYSCDVCSKSFRRKDSLHMHARVHTGERPYSCDMCNKTFSIRGVLKRHLRIHSGERPYCCDVCNKAFSRPSILRAHQRIHSGERPYSCHVCKKSFRMQSNMKEHQRIHNGERPYSCDVCNMSFGFLSNLKRHQCTHIEEGPYSCDVCKKSFRLESNLKEHKCIHSVKRQYSCDRCNASFCYVSNLKKHQRIHNEYPYSCGVCNKSFGYQSSFKAHQRIHSGERPYSCGVCNASFRVVSILKAHERIHDGERPYLCGVCKKSFSYQSNLKSHQSIHVGERPYSCDICNKSFARQDNLKTHQGTHTGERPYFCNVCNKSFNRPSSLKAHQRVHSEERSYGCDVCNKSFTTQRNLTRHKDIHGVKGPYSCDDCSKSFSYQSSLKVHRRIHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -