Csec002538.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- Znf296
- Assembly
- GCA_002891405.2
- Location
- NW:232427-319067[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00051 0.015 15.3 1.2 2 23 285 305 284 305 0.97 2 21 0.00012 0.0034 17.3 0.0 1 23 311 333 311 333 0.96 3 21 0.0006 0.017 15.0 2.8 1 23 339 361 339 361 0.98 4 21 0.0001 0.0029 17.5 3.7 1 23 367 389 367 389 0.97 5 21 0.0046 0.13 12.3 0.2 1 23 395 417 395 417 0.97 6 21 5.9e-05 0.0017 18.2 0.8 1 23 423 445 423 445 0.98 7 21 0.0011 0.031 14.2 7.0 1 23 456 478 456 478 0.98 8 21 3e-06 8.5e-05 22.3 0.8 2 23 485 506 484 506 0.97 9 21 3.8e-07 1.1e-05 25.1 2.3 2 23 513 534 513 534 0.97 10 21 0.0022 0.062 13.3 3.3 1 21 540 560 540 561 0.94 11 21 0.33 9.4 6.4 0.6 2 23 581 601 580 601 0.87 12 21 5.3e-06 0.00015 21.5 0.0 1 23 607 629 607 629 0.97 13 21 3.1e-06 8.7e-05 22.3 1.0 1 23 635 657 635 657 0.98 14 21 7.5e-05 0.0021 17.9 2.5 1 23 663 685 663 685 0.97 15 21 0.0013 0.038 14.0 2.1 1 23 691 713 691 713 0.97 16 21 0.00015 0.0044 16.9 1.4 1 23 719 741 719 741 0.99 17 21 0.0019 0.054 13.5 2.7 1 23 752 774 752 774 0.98 18 21 1.1e-05 0.00032 20.5 0.0 1 23 780 802 780 802 0.98 19 21 1.5e-06 4.2e-05 23.3 0.3 2 23 809 830 809 830 0.97 20 21 9.8e-07 2.8e-05 23.8 2.4 1 23 836 858 836 858 0.97 21 21 4.6e-05 0.0013 18.6 2.7 1 23 864 886 864 886 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCGTTAAATTATATGGAACTTTGTCGTCTTTGCCTAGTAAAAGAACGAGTGTCGATACCAATTTTTGAAGGAGAAGGAAATGTACGCCAGATATTTCTTAAAATAGCTTCATGCCTCCCCGTAAAGGTTGCAAGGGATGACAAACTTCCAAAGAAGATCTGCAGTGATTGTATGTATAAATTAGACAATGCATATCAGTTTTGGAATACAACTGCAAATGCAGAGAAACAGTTATTGCAGTGGCTTGGTGAAATTGCCAGCGATGACAAGAAGAGTGTCCCTAGCAACACAATAGAAACTGAGCAGTTGGTGTTGAAAGAAGAGGCTGTAGAGCAAGATCAGGGATCAGAATTAGCCAAGGGTCTGAGTCGAGTAGAAGCTGTTTTGGCTGACGATTGTAAGGGGGGAAGTGAGGACGAAGATGAGTCGGAGAGTGAGGACGAGGGTTCTAACAGTGAGGACAGTGGGGAGGATGATGGTGGTGAAGCCCCAAGCAAAGAAGAAGCAGAGTCGGATGAAGAGCCATATGGACCTTTGGAACCCACAACGTTTGTCAATGTATCTCTTGCGGGGTGTGATGAAGCTGGTCCTTCTGGGatgcagcaacagcagcaagAACAGCAACAACAAGAACAGCAGCATCATCAGCAGGAGCAACAACAGGGTCCTCAGCAGAGCCAGTCATTGCAACAAGTCCAGCAGTCATCACAGTCACAGTTCCTCACTCCAGGAGCACCGTCCACAAGCACCGCAGCACCCACTTCAGCCAGTGGATCTGCAGACAGTGCTTATAATGAATCTATtggaaagttgaaaagcagaTCAACCAAGGAAGAGAGTTCAAACAAGTGTGAATTCTGTGGAAAATCGTTTGTAAAGAGTAAGCTACTGATTCACAGAAGGATCCATACAGGGGAAAGGCCATTTGCTTGTACTGAGTGCGGCGAGGCATTTATCTCAAAAGGTGCTATGACAGTTCATATGGTCATACATAGTGATGAGCGGCCATATTCCTGTGAATTGTGTAGTAGTAGGTTTAAACGGTCATTTGAGTTGAAAAATCATAGGAAAATTCACACAGGGGAAAAGAGCCATGTGTGTGACATCTGTGGTTACTCATGCATCCAGAAGACTAACTTGGTGAATCATAGAAAAAGACATCTGAATGATTACAAGTTTAGGTGTGTTGTTTGCATGAAAGGATTTTACACAAACAGTGAAGTCCAGGAGCATATGATGGGACACACTGGTGAGAAACCATTTCAGTGTGATGTGTGTGGTTTGGTGTACCGTTACCGGTATCAGCTGGTCCAGCATTATAAGTTACATGACCCAAAGTATGTACCTCCTCCTAAGTTACATCAGTGTGACATCTGTAGCAAGTGTTATTCCCACAAGAAAGTGTTACTGGTGCACATGAAATCCCATACAGGGGAGAGCCAATGTGTCTGCGACATTTGTGGCAAAGTTCTGTCAAGCAAAGATTATCTGAAAGTACATGTTCGTACCCACACTGGTGAGAAGCCCAATGTGTGTCATGTGTGCGGGAAGGCATTCAGCTCAAAGCGATATTTGAAGATCCATCAGCGTACCCATACAGGGGAACGGCCGTTTACATGCGACTGTTGTAAGAAGTCTTTCACACAGCGTTCCTCCCTGATTGTTCACAAAAGATCTGGAGACAAAGCCTCTAGAGGTACAAAAAGCAGCTCCAAAAAGGAAAAGGTTTCAAACAAATGTGAATTCTGCGGAAAAGTTCTCATCAAAAGTAAAATGCTAATTCACCGGAGGATTCATACTGGGGAACGGCCATTTGTGTGCACTATTTGTGGAGAGGCATTTGTGTCCAAAGGAGCATTAACAGTTCACATGGTGATTCATAGTGAAGAACGTCCCTTTCCTTGTGACATTTGTGATCGCACTTTCAAGCGAGCATTTGAGTTAAAAAGCCATAAAAAAATCCATACTGGGGAAAAGAACCATGTATGTGATATTTGTGGTTATTCATGTATACAGAGAGCAAATCTGGTGAATCACAGGAAGCGGCATCTCAGTGAGTACAAGTACAAATGTGAAGTCTGCAACACTGGATTCTACACAAAGACAACATTTCAAGAGCACAAAACAATCCACACAGGTGAAAAACCTTACCAGTGTGACATTTGTGGTCTGGCATATCGGTACAGATACAGGCTAACACTGCATAAGAAGACACATGAACCTAATTTTACACCCCCAGAAAAGAAACACCAATGTGACATCTGTAAGAAGCGGTTTGCACGCAAGCAGGTTATGTTACTTCATCTGAAATCCCACACAGGGGAAAGCCAGTTTGTGTGTGATATATGTGGTAAAAATGTTGCCAGCAAGGCATCACTGATGGTGCATGTGAGGACTCACACTGGTGAGAAACCAAATGTATGTGATGTGTGTGGTAAGGCATTCATATCTCGCAACTATTTGCGTGTTCACCAGCGGACTCATACGGGAGAAAAACCACATTCATGCGATGAGTGTGGTAAATCCTTCACACAGCGCTCAACTCTTGTAGTGCACAAGAGGTCACATACAGGACAAAGACCATACATGTGTCATGTATGCCAAAAAGGCTTTGTTTCAAGGACTCTTCTTATGACCCACCAGAAGAGTCATGAGCACATGTTCTAA
- Protein Sequence
- MSSLNYMELCRLCLVKERVSIPIFEGEGNVRQIFLKIASCLPVKVARDDKLPKKICSDCMYKLDNAYQFWNTTANAEKQLLQWLGEIASDDKKSVPSNTIETEQLVLKEEAVEQDQGSELAKGLSRVEAVLADDCKGGSEDEDESESEDEGSNSEDSGEDDGGEAPSKEEAESDEEPYGPLEPTTFVNVSLAGCDEAGPSGMQQQQQEQQQQEQQHHQQEQQQGPQQSQSLQQVQQSSQSQFLTPGAPSTSTAAPTSASGSADSAYNESIGKLKSRSTKEESSNKCEFCGKSFVKSKLLIHRRIHTGERPFACTECGEAFISKGAMTVHMVIHSDERPYSCELCSSRFKRSFELKNHRKIHTGEKSHVCDICGYSCIQKTNLVNHRKRHLNDYKFRCVVCMKGFYTNSEVQEHMMGHTGEKPFQCDVCGLVYRYRYQLVQHYKLHDPKYVPPPKLHQCDICSKCYSHKKVLLVHMKSHTGESQCVCDICGKVLSSKDYLKVHVRTHTGEKPNVCHVCGKAFSSKRYLKIHQRTHTGERPFTCDCCKKSFTQRSSLIVHKRSGDKASRGTKSSSKKEKVSNKCEFCGKVLIKSKMLIHRRIHTGERPFVCTICGEAFVSKGALTVHMVIHSEERPFPCDICDRTFKRAFELKSHKKIHTGEKNHVCDICGYSCIQRANLVNHRKRHLSEYKYKCEVCNTGFYTKTTFQEHKTIHTGEKPYQCDICGLAYRYRYRLTLHKKTHEPNFTPPEKKHQCDICKKRFARKQVMLLHLKSHTGESQFVCDICGKNVASKASLMVHVRTHTGEKPNVCDVCGKAFISRNYLRVHQRTHTGEKPHSCDECGKSFTQRSTLVVHKRSHTGQRPYMCHVCQKGFVSRTLLMTHQKSHEHMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -