Csec005290.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptotermes secundus
Gene Symbol
-
Assembly
GCA_002891405.2
Location
NW:668845-697043[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00068 0.019 14.9 2.4 1 23 10 32 10 32 0.97
2 22 3.3e-05 0.00094 19.0 2.9 1 23 38 60 38 60 0.98
3 22 0.0079 0.23 11.5 4.4 1 23 66 88 66 88 0.97
4 22 8.6e-05 0.0024 17.7 1.3 1 23 94 116 94 116 0.98
5 22 9.7e-07 2.8e-05 23.8 0.6 1 23 122 144 122 144 0.98
6 22 0.00014 0.0041 17.0 4.1 1 23 155 177 155 177 0.97
7 22 3.5e-06 9.9e-05 22.1 1.7 1 23 182 204 182 204 0.95
8 22 1.5e-05 0.00042 20.1 0.1 2 23 211 232 211 232 0.97
9 22 1.8e-06 5.2e-05 23.0 2.2 1 23 238 260 238 260 0.98
10 22 8.8e-07 2.5e-05 24.0 3.1 1 23 266 288 266 288 0.99
11 22 0.67 19 5.5 1.5 2 23 339 359 338 359 0.91
12 22 0.0041 0.12 12.4 5.3 1 23 365 387 365 387 0.97
13 22 1.3e-05 0.00036 20.3 1.2 1 23 393 415 393 415 0.99
14 22 1e-06 3e-05 23.7 2.3 1 23 421 443 421 443 0.99
15 22 0.00076 0.022 14.7 5.3 1 23 449 471 449 471 0.97
16 22 0.00035 0.0099 15.8 1.6 1 23 477 499 477 499 0.98
17 22 3.4e-05 0.00096 19.0 0.8 1 23 505 527 505 528 0.96
18 22 0.21 6 7.0 2.6 1 20 538 557 538 560 0.94
19 22 0.00059 0.017 15.1 0.8 1 23 566 588 566 588 0.93
20 22 5.4e-07 1.5e-05 24.6 0.2 2 23 595 616 595 616 0.97
21 22 5.4e-07 1.5e-05 24.6 3.5 1 23 622 644 622 644 0.98
22 22 3.6e-06 0.0001 22.1 2.9 1 23 650 672 650 672 0.99

Sequence Information

Coding Sequence
ATGAAGTGCCACAATGGCAAAAAAGAGTTCAGATGTGAGGAATGTGGGAAGGAATGTCTTTCCAAGAAACTGCTGAAGCGTCACATGGGCAGTCACAGTGAAGACCGTCCATTCCAATGTGATATCTGCAGTCGTAAGTTCAAAAGATCATATGAagttacaaaacataaaaagattCATAAGGGTGAGAAGAACCACGTGTGTGATGTTTGTGGCTATGCGACAATGCACAAAGCATGCCTGGAGACTCATCAGAAAAGGCACCTTCGTGAATATATGTTCAAGTGTGATGTTTGTGGTAAGGGTTTTTTCTCAAGTTTTGAATTCCGAGAACATAAGAACATACACACAGGTGAAAAACCTTACATGTGTGACATCTGTGGGAAGGCCTACACATCCAAGAACAGCCTCATGGCTCACAAGAAAACTCATGAGCCTGATGCTAAGCCCACAGAAAAGGTTCACGAGTGTAAGATGTGCAGTAAGAGCTTCAAATATCGGAAATCTCTGTTAGTGCATGTGAAATCTCACGCAGGGGAAAAGTTTCTGTGTGACTTCTGTGGGAAGGCATTCTCTACTAAAGACACATTGAAACTTCACCGAAGAAATCACACAGGAGAGAAATCAAATGTGTGCAATGTGTGTGGTAAGGCATTCAGTGTTCTCTACACTCTCAAAGTGCACCAACTCATACACACAGGTGAAAAGCCCCATACATGTGACCAGTGTGGGAAAGCATTCACACAACGTTCCACTCTAGTTGTCCACAAAAGATCTCACACAGGACAAAAACCATATCAGTGCCATATCTGTAACAAGACATTTGTATCCAGAACACTCCTCAACCTACATCTCAGGAGTCATGGTGATCATGCTTATTACAAGCATAGTTATTCTGTTGTGAATTGGCCAACAAATGGCAGAAAAGACCAGTCAGAGAGGCAGCGTAAGCGAAGCTGCAGGTTCAACAGGAATGAGTCACAGCCACATATTGAGGAAAGAAGAGGCTCTTTGGTGTGTGAGTTCTGTGGGAAGATTTGCAGCAAACGACAAATAGGAGTACATCGACAAACCCACTCAGGAGACAAACCTCATCACTGTGTCATATGTGGGAAGACATTCATTAGCAGTGCACAGCATAACTCTCACTTGAGGACCCACAACACCCTAAAGGAGTTCAAATGTCAGACTTGTGGAAAAGTGTTTGCATTAAACAGACGTTTACAAATCCACATGAAAAGTCATAGTGAGGAGCGCCCATACACATGTGATATTTGTAACAAACGGTTTAAGCGTTCATACTATCTTATTGATCACAAGCGAATTCACACAGGTGAGAAAGTTCATGAGTGTGATATCTGTGGCTACTCATGTATTCAGAAGGTCCATCTGGTGAATCACAAGAAACGACACTTTAATGAATACAGATTTGAATGTGACATATGCAGCAAGGGTTTCCACACAAATACAGAGCTACAGGGACACAAGAATATGCACACTGGAGACCGTCCATATCAGTGTGATATTTGTGGCAAAGCATATCCATCTAAAACAAATATGATGGGGCATAAGCGAGCTCACCACCCAGACTCAAGGCAGGACCCCAAGCGCTATCAGTGTGAGGCCTGCTGCAAGTCTTTCACATACAAACGCTCTCTGCTGCTCCATATCTGGAGCCACACAGGGGAGAGCAAATTTCTTTGTGATATATGTGGCAAGGCCCTCACCAGTAATGAGACTCTCAAGGCTCACTGTCGGATCCACACAGGTGAGAAACCAAATGTGTGCCCAGTGTGTGGTAAAGCATTCAGTAAGGCAAGCTACCTCAAAATGCATCAGCTCACACACACTGGTGAGCGGCCCCATCGTTGTAATGAATGTGATAAGACATTCACACAACGCTCGTCGCTTGTTATTCATCAGCGTTACCACACAGGACAGAGACCATATGAGTGTCATATCTGTAGTAAGGGTTTTGTGTCCAAAACTATGCTTAAAACTCATCAAAACACCCACAATTTGTTTAGTCCTAACTCTTCTCCCTAA
Protein Sequence
MKCHNGKKEFRCEECGKECLSKKLLKRHMGSHSEDRPFQCDICSRKFKRSYEVTKHKKIHKGEKNHVCDVCGYATMHKACLETHQKRHLREYMFKCDVCGKGFFSSFEFREHKNIHTGEKPYMCDICGKAYTSKNSLMAHKKTHEPDAKPTEKVHECKMCSKSFKYRKSLLVHVKSHAGEKFLCDFCGKAFSTKDTLKLHRRNHTGEKSNVCNVCGKAFSVLYTLKVHQLIHTGEKPHTCDQCGKAFTQRSTLVVHKRSHTGQKPYQCHICNKTFVSRTLLNLHLRSHGDHAYYKHSYSVVNWPTNGRKDQSERQRKRSCRFNRNESQPHIEERRGSLVCEFCGKICSKRQIGVHRQTHSGDKPHHCVICGKTFISSAQHNSHLRTHNTLKEFKCQTCGKVFALNRRLQIHMKSHSEERPYTCDICNKRFKRSYYLIDHKRIHTGEKVHECDICGYSCIQKVHLVNHKKRHFNEYRFECDICSKGFHTNTELQGHKNMHTGDRPYQCDICGKAYPSKTNMMGHKRAHHPDSRQDPKRYQCEACCKSFTYKRSLLLHIWSHTGESKFLCDICGKALTSNETLKAHCRIHTGEKPNVCPVCGKAFSKASYLKMHQLTHTGERPHRCNECDKTFTQRSSLVIHQRYHTGQRPYECHICSKGFVSKTMLKTHQNTHNLFSPNSSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-