Csec003896.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptotermes secundus
Gene Symbol
-
Assembly
GCA_002891405.2
Location
NW:15694-44309[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 4.9e-05 0.0014 18.5 3.6 1 23 163 185 163 185 0.98
2 21 1.6e-06 4.4e-05 23.2 4.1 1 23 191 213 191 213 0.99
3 21 2.2e-06 6.2e-05 22.7 1.0 1 23 219 241 219 241 0.99
4 21 0.00011 0.0032 17.3 1.2 1 23 247 269 247 269 0.99
5 21 3.4e-05 0.00097 19.0 2.5 1 23 275 297 275 297 0.97
6 21 0.00064 0.018 15.0 2.1 1 23 372 394 372 394 0.97
7 21 6.7e-07 1.9e-05 24.4 0.6 1 23 400 422 400 422 0.99
8 21 0.00018 0.005 16.7 0.8 1 23 428 450 428 450 0.98
9 21 0.00013 0.0038 17.1 0.9 1 23 456 478 456 478 0.96
10 21 0.00023 0.0066 16.4 0.2 1 23 484 506 484 506 0.98
11 21 2.9e-05 0.00082 19.2 3.8 1 23 512 534 512 534 0.99
12 21 0.00034 0.0097 15.8 1.8 1 23 540 562 540 562 0.98
13 21 2.4e-05 0.00067 19.5 0.1 1 23 568 590 568 590 0.98
14 21 7.7e-05 0.0022 17.9 6.0 1 23 596 618 596 618 0.99
15 21 3e-05 0.00085 19.2 1.5 1 23 778 800 778 800 0.99
16 21 3.2e-06 9.1e-05 22.2 2.4 1 23 806 828 806 828 0.98
17 21 0.00031 0.0087 16.0 1.0 1 23 834 856 834 856 0.98
18 21 1.8e-05 0.00052 19.8 2.4 1 23 862 884 862 884 0.99
19 21 3.2e-07 9e-06 25.4 1.5 1 23 890 912 890 912 0.99
20 21 3.9e-06 0.00011 21.9 4.5 1 23 918 940 918 940 0.99
21 21 0.089 2.5 8.2 1.5 3 23 948 968 946 968 0.98

Sequence Information

Coding Sequence
ATGGAAATTAGGCTTGTAGGCATATACTGCACGGTGTATGTGATTGTGCACAGCATGGATATAATCAAAGTAGAATGTGATCCTGACATTGAAGCACATGCAGTGTCTCTAGGTGGTAAAAGTCTGAAGcaaaatgtgaaagaagaaCTGTCAGAAGACCCAGTCTCCATCTCTACGCAAAAGAGTGAGCATAATACAAATGAAACCAAAGCGGATCCTCATGCAGATATTGATGAGCCAtgtaaaatgaaggaaaattctCTTGAAGAACCAACAGGAGGCACAGATCAGGAAGATCCTCTTGGAGAATCCACAAGGGGTGTGAATGAGGAAGACACAAAGATACAGCCTTGGTGCTTTGTAGCAGTCAAGGAAGAGGTGAAAGATGAAGAATCAAATGATGGAGCAGTGGAAGATCATGACATATGTCAGGACAGTGATACTCTGAAAACACAAGCAGACAAAGTGGAGGACGAAGAGAAACCTCATAAATGTAAGGTGTGTGGAAAGAGATACAGAAAATTGCTTTACCTTAAGGAGCATATGCGTGTCCACACAGGAGACCGTCCATTTAAATGTGATGTTTGTAAGAAGGAATTTACCCAGTGCAGCCTTTTGAAGACGCATATGCGAGTGCACACAGGAGAGAAGCCATTCAAGTGTGAAGTGTGCAATGCCAGATTTGCGCAACGCAGCAACCTTTGGAAACATTCTCGCACTCACTCAGGCGAGAAGCCATATAAATGTGATGTTTGTAGTAAAGAATTTGCAGGAAATTGGCAACTTAAACATCATTCTCGTATTCACAGTGGAGTGAAACCATATAAATGTGAAATATGCAATAAACAATTTTCTCATGGCAGTAACCTCAGTCGACATTCCAGTATCCACAGAACAGTAAGCCTGCAACACTTCTCAAATTATGGAGAGGTTATTCCTGCTGGCAGTATTTCAACGCAAAATGAAAATGTGTGCAGAATTTGTGGTGGTGTAACCAAGATCACAAGTGAGACAGGACTCAAATCATCAGTTTGTATGAAGTGTGGGGATGCGAGAAAAGATATTGGAgacaaaaacaatgaaaatgatGATAAATATTCCCAAAACAAAATCCATGTGTGTGGTGTATGTGGTAATACATATAAGAATGCTCGCCATCTGAGGGAACATTCCCGTATACACAAAGGACCCAGACCCTTTAAGTGTGATGTATGTGGTAAAGAATTTTATCAGAGTGGAAGTCTGAAGACACATGTGCGTGTACACACGGGAGAGAAGCCATATAAGTGCGACGTTTGTGGCAGGCAATTTGCTCAGAGTGGCCAGCTTGCATGTCATGCACGCACTCATACTGGCGAGAAACCTTATGAATGTATTGTATGTAACCGGCAGTTTGCACAGAAAGCGCAGTTGAGATCACATTATCGCACACATACTGGAGAACGGCCTTATGAATGTGACGTTTGTGGTAAAAGATTCACTTTGCCTGGGGTATTGAAGTTCCACATGCGAATACACACCGGAGAAAAACCTTATAAGTGTGAAGTTTGTAAGAAAGACTTTACAACTAGTTGTGCTCTTAAAACTCATACACGTATCCACAGTAAAGAGAAACCGTACAAATGTGAGGTATGTGGCAAACAGTTTGCTCAGAGAGCGCAACTTGTATGCCATTCACGCACTCATACGGGTGAGAAACCGTATGAATGTACCGTATGTGGAAAGAGGTTTGCTCAGGTAGGAATGCTTCGTGACCATGGTCGTATCCATACGGGAGAGAAACCTTATAAATGTGAAATTTGTAATCACAGGTTTTCGCAACATGCAAATTTTATAAGACATTCACGCACCCATAAGGCCTTGGACCAGATAGAAGTGGACTGGATCCAGATATTGAGATGTATATTAACCAGTATGAGTAACACTACTTTAAAGCGCAGTATGGATTTAGTCAAAGTGGAACTGGATTCTGATAGTGAATCTCAGCCGGAGACTTCATCCACTGAAGCACGGGAGACCGACTTGAAGCAGGAAAAGCCTCCTGCGCCGTTCGCATTTGTTGCTGTGACAGAAGTGGCCAACATGTATAAAATGGAGTATGAAGCATATTCTGAGTCCCATTCAGTGCCTTCAGTAAAAGTGACTGTAGGAAAGGTTGAAGCTTATGATGAGTCATCAGATTCTACAACAGACAGTGAAGAAATTAAGGAGGACGTAGTAATGAAAGGTCATGTACCTGTAAACAGTGGTGACAACCAGTCAGGGATCCAAGCTGAAGAGATTCGTTCTAGAGATGGAAAAGAGACAAACTGCAACACAGAGGCAAAGCAATTTAAATGTGATGTGTGTGACATGGCATTTCTTCAAAATCAAAATCTAAAAAGACATTATCGTACTCACACAGGTGAAAAACCCTACAGATGTAGTATTTGTAATATGTTTTTCTCCCAGAGTCAGAACTTGAAGCGACATTATGCTACACACTCGCGGGAGAAACCATTCAGGTGTGATGTTTGTGAAAAGTTGTTTTCGGATTCTCTGAAGCTGAAATTACATTATCGTATACATACTGGAGAGAAACCTTACAAGTGTGATGTATGTAGTAAAGAATTTTCATATAGTTTGAATTTTAATAGACATTATCGGGTTCACACTGGAGAAAAGCCATATGAGTGTAAGATATGCAAGAGACAGTTTTCACAGAGTagaaatctgaaggttcataTTCGCATTCATACTGGTGAGAGGCCTTATAAATGTGAACTATGTAGCAAGAGGTTCAACACGCGTGGTAATTTGAAGATCCACCATAGAACACACACTGGTGAAAAGCCATTCGGTTGTGAATTATGTAAAAGGAAGTTTGCAGCAGTTGCACATGTGAAGAACCATTATCGGAAGCACATGGTATGA
Protein Sequence
MEIRLVGIYCTVYVIVHSMDIIKVECDPDIEAHAVSLGGKSLKQNVKEELSEDPVSISTQKSEHNTNETKADPHADIDEPCKMKENSLEEPTGGTDQEDPLGESTRGVNEEDTKIQPWCFVAVKEEVKDEESNDGAVEDHDICQDSDTLKTQADKVEDEEKPHKCKVCGKRYRKLLYLKEHMRVHTGDRPFKCDVCKKEFTQCSLLKTHMRVHTGEKPFKCEVCNARFAQRSNLWKHSRTHSGEKPYKCDVCSKEFAGNWQLKHHSRIHSGVKPYKCEICNKQFSHGSNLSRHSSIHRTVSLQHFSNYGEVIPAGSISTQNENVCRICGGVTKITSETGLKSSVCMKCGDARKDIGDKNNENDDKYSQNKIHVCGVCGNTYKNARHLREHSRIHKGPRPFKCDVCGKEFYQSGSLKTHVRVHTGEKPYKCDVCGRQFAQSGQLACHARTHTGEKPYECIVCNRQFAQKAQLRSHYRTHTGERPYECDVCGKRFTLPGVLKFHMRIHTGEKPYKCEVCKKDFTTSCALKTHTRIHSKEKPYKCEVCGKQFAQRAQLVCHSRTHTGEKPYECTVCGKRFAQVGMLRDHGRIHTGEKPYKCEICNHRFSQHANFIRHSRTHKALDQIEVDWIQILRCILTSMSNTTLKRSMDLVKVELDSDSESQPETSSTEARETDLKQEKPPAPFAFVAVTEVANMYKMEYEAYSESHSVPSVKVTVGKVEAYDESSDSTTDSEEIKEDVVMKGHVPVNSGDNQSGIQAEEIRSRDGKETNCNTEAKQFKCDVCDMAFLQNQNLKRHYRTHTGEKPYRCSICNMFFSQSQNLKRHYATHSREKPFRCDVCEKLFSDSLKLKLHYRIHTGEKPYKCDVCSKEFSYSLNFNRHYRVHTGEKPYECKICKRQFSQSRNLKVHIRIHTGERPYKCELCSKRFNTRGNLKIHHRTHTGEKPFGCELCKRKFAAVAHVKNHYRKHMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-