Csec012081.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptotermes secundus
Gene Symbol
-
Assembly
GCA_002891405.2
Location
NW:655873-676774[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.001 0.029 14.3 0.0 1 23 95 117 95 117 0.98
2 19 1.2e-06 3.5e-05 23.5 3.8 1 23 151 173 151 173 0.97
3 19 2.6e-06 7.4e-05 22.5 4.4 1 23 179 201 179 201 0.98
4 19 1.3e-05 0.00038 20.3 4.6 1 23 207 229 207 229 0.97
5 19 0.0029 0.084 12.9 9.1 1 23 235 257 235 257 0.96
6 19 2.5e-07 7e-06 25.7 6.4 1 23 263 285 263 285 0.98
7 19 5.2e-06 0.00015 21.6 1.2 1 23 291 313 291 313 0.98
8 19 8.2e-07 2.3e-05 24.1 2.2 1 23 319 341 319 341 0.98
9 19 4.7e-06 0.00013 21.7 1.5 1 23 347 369 347 369 0.98
10 19 4.7e-06 0.00013 21.7 1.5 1 23 375 397 375 397 0.98
11 19 4.7e-06 0.00013 21.7 1.5 1 23 403 425 403 425 0.98
12 19 4.7e-06 0.00013 21.7 1.5 1 23 431 453 431 453 0.98
13 19 4.7e-06 0.00013 21.7 1.5 1 23 459 481 459 481 0.98
14 19 4.7e-06 0.00013 21.7 1.5 1 23 487 509 487 509 0.98
15 19 4.7e-06 0.00013 21.7 1.5 1 23 515 537 515 537 0.98
16 19 4.7e-06 0.00013 21.7 1.5 1 23 543 565 543 565 0.98
17 19 8.4e-06 0.00024 20.9 1.9 1 23 571 593 571 593 0.98
18 19 2.1e-06 6e-05 22.8 4.1 1 23 599 621 599 621 0.97
19 19 3.1e-06 8.8e-05 22.3 1.4 1 23 627 649 627 649 0.99

Sequence Information

Coding Sequence
ATGAAATATTGTGCATTCTCAGTGCCAAGAATTCTGTTACAAGGAgccaaagaaatatttcctgctgtGAGAGAAAGGATGaactgtacaaattcagagaacgTTTTAGTGGGTCTGTATGGTGAGCCATACCCAACACCTCATAATGCAtatcaggccatgaatgtaaagGCTAaggcagaagaggaagaggatcctcTTGCAGTAACATTTCCAGAACTAAAGGCTGAACCTAAGggtgATTTGAATGAACTTAAATTTCTACATGATGAGGAGCGACAATATTCCTGTGATGAATGTGGTGATTCATTCAGTCAAGAGGAAATTCTGATagcacatcaacgcatacatagcagGGAGCAGTCGTTTTGTTGCAgtatgtgtaataagtcattaagCTGTAAGAGTTGTCTGAAGACAAATCAGAGCATACCTACTGGAGagaggccattttgctgtgatgtgtgtagtaagtcattcagtgttaagagtaatctgaagacccatcagcgcatacatactgggCAGCAGTCATTTGTGTGTGACatttgtaataagtcattcatttcaaagtgtgatctgaagaggcatatgcacatacatactggggagaagccgttttgctGTGGCATGTGTGGTAAGTCATTCGGCCGGCAGAGTAGTCTGAGGACACATCAGCATATACATAGTGGGgcgaagccattttgctgttctgtatgtaataagtcattcagtcagcagagtcatctgaagtttcatcagcacatacatactggggagaagccattttgttgtaatgactgtaacaagtcattcagtcagcagagtcatctgaagattcatcagcgcatacatagtggggagaagtcatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaacattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcagtgtgcagagtcatctgaagattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaagattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaagattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaagattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaagattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaagattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaagattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaagattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaagattcatcagcgcatacatagtggggagaagccatatttctgtgctgtgtgtaataagtcattcggtgtgcagagtcatctgaagatgcatcagcgcatacatagtggggagaagccatttttctgtgCTGTATGTAAAAAATCATTCTGTgtgcagagtaatctgaagcgtcatcagcgcatacatagtggtgagcgGCCATTTAAATGTgacgtgtgtaataagtcattcagttggCAAAGTAGTCTGAAGATACATCAGCAAACACATGTTGATGTGTGa
Protein Sequence
MKYCAFSVPRILLQGAKEIFPAVRERMNCTNSENVLVGLYGEPYPTPHNAYQAMNVKAKAEEEEDPLAVTFPELKAEPKGDLNELKFLHDEERQYSCDECGDSFSQEEILIAHQRIHSREQSFCCSMCNKSLSCKSCLKTNQSIPTGERPFCCDVCSKSFSVKSNLKTHQRIHTGQQSFVCDICNKSFISKCDLKRHMHIHTGEKPFCCGMCGKSFGRQSSLRTHQHIHSGAKPFCCSVCNKSFSQQSHLKFHQHIHTGEKPFCCNDCNKSFSQQSHLKIHQRIHSGEKSYFCAVCNKSFGVQSHLNIHQRIHSGEKPYFCAVCNKSFSVQSHLKIHQRIHSGEKPYFCAVCNKSFGVQSHLKIHQRIHSGEKPYFCAVCNKSFGVQSHLKIHQRIHSGEKPYFCAVCNKSFGVQSHLKIHQRIHSGEKPYFCAVCNKSFGVQSHLKIHQRIHSGEKPYFCAVCNKSFGVQSHLKIHQRIHSGEKPYFCAVCNKSFGVQSHLKIHQRIHSGEKPYFCAVCNKSFGVQSHLKIHQRIHSGEKPYFCAVCNKSFGVQSHLKIHQRIHSGEKPYFCAVCNKSFGVQSHLKMHQRIHSGEKPFFCAVCKKSFCVQSNLKRHQRIHSGERPFKCDVCNKSFSWQSSLKIHQQTHVDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-