Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:1074104-1116125[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.8e-07 1.7e-05 24.5 1.4 1 23 206 228 206 228 0.97

2 19 0.0015 0.043 13.8 3.9 1 23 234 255 234 255 0.91

3 19 4.9e-06 0.00014 21.6 2.9 1 23 261 283 261 283 0.98

4 19 1e-06 2.9e-05 23.8 4.0 1 23 289 311 289 311 0.98

5 19 1.5e-05 0.00043 20.1 6.0 1 23 317 339 317 339 0.98

6 19 3.8e-08 1.1e-06 28.2 2.8 1 23 345 367 345 367 0.98

7 19 1.3e-05 0.00036 20.3 2.9 3 23 375 395 374 395 0.97

8 19 4.5e-07 1.3e-05 24.9 4.9 1 23 401 423 401 423 0.98

9 19 6.8e-07 1.9e-05 24.3 3.5 1 23 690 712 690 712 0.98

10 19 2e-06 5.7e-05 22.8 7.4 1 23 718 740 718 740 0.98

11 19 0.00015 0.0042 17.0 6.1 1 23 746 768 746 768 0.98

12 19 5.6e-07 1.6e-05 24.6 4.5 1 23 774 796 774 796 0.98

13 19 1.1e-06 3.3e-05 23.6 1.0 1 23 802 824 802 824 0.98

14 19 4.8e-07 1.4e-05 24.8 2.8 1 23 830 852 830 852 0.98

15 19 4.1e-06 0.00012 21.9 1.7 1 23 858 880 858 880 0.98

16 19 0.00026 0.0074 16.2 7.0 1 23 886 908 886 908 0.98

17 19 1.3e-05 0.00037 20.3 4.9 1 23 914 936 914 936 0.97

18 19 0.0011 0.03 14.3 7.5 1 23 942 964 942 964 0.98

19 19 7.9e-08 2.3e-06 27.3 3.5 1 23 970 992 970 992 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.8e-07	1.7e-05	24.5	1.4	1	23	206	228	206	228	0.97
2	19	0.0015	0.043	13.8	3.9	1	23	234	255	234	255	0.91
3	19	4.9e-06	0.00014	21.6	2.9	1	23	261	283	261	283	0.98
4	19	1e-06	2.9e-05	23.8	4.0	1	23	289	311	289	311	0.98
5	19	1.5e-05	0.00043	20.1	6.0	1	23	317	339	317	339	0.98
6	19	3.8e-08	1.1e-06	28.2	2.8	1	23	345	367	345	367	0.98
7	19	1.3e-05	0.00036	20.3	2.9	3	23	375	395	374	395	0.97
8	19	4.5e-07	1.3e-05	24.9	4.9	1	23	401	423	401	423	0.98
9	19	6.8e-07	1.9e-05	24.3	3.5	1	23	690	712	690	712	0.98
10	19	2e-06	5.7e-05	22.8	7.4	1	23	718	740	718	740	0.98
11	19	0.00015	0.0042	17.0	6.1	1	23	746	768	746	768	0.98
12	19	5.6e-07	1.6e-05	24.6	4.5	1	23	774	796	774	796	0.98
13	19	1.1e-06	3.3e-05	23.6	1.0	1	23	802	824	802	824	0.98
14	19	4.8e-07	1.4e-05	24.8	2.8	1	23	830	852	830	852	0.98
15	19	4.1e-06	0.00012	21.9	1.7	1	23	858	880	858	880	0.98
16	19	0.00026	0.0074	16.2	7.0	1	23	886	908	886	908	0.98
17	19	1.3e-05	0.00037	20.3	4.9	1	23	914	936	914	936	0.97
18	19	0.0011	0.03	14.3	7.5	1	23	942	964	942	964	0.98
19	19	7.9e-08	2.3e-06	27.3	3.5	1	23	970	992	970	992	0.98

Sequence Information

Coding Sequence: ATGAAACATGTACCAGGCCCCTGTAGTGAGACATATCCAGCCTCTTCCCCTGATGCAAATCAGGCCGTGAATATCAAAGTCGAGGAAGTCTCAGATGTAGAAGTGGAGGAGGAGCCGCCTGTGCCAATGACATTTGTAGGAATAAAGGCTGAACATGAGAACTGCATGGACTTACAGAAACATGTACCAGGCCCCTGTAATGAGACACATCCATCCTCTTCCCCTGATgcaaatcaggccatgaatgtCAAAGTCGAGGAAGTCTCAGATGTCGAAGTGGAGGAGGAACGTCCTGTGCCAATGACATTTGTAGGAATAAAGGCTGAACATGAGAAACATGTACCAGGTCCCTGTAGTGAGAAATATCCAGCCTCTTCCCCTGATGCAAATCAGGCCATGAGTGTCAAAGTTGAGGAAGTCTCAGATGTCGAAGTGGAGGAGGAACATCCTGTGCCAATGACATTTGTAGGAATAAAGGCTGAACATGAGAGTTTGCTGAATGAAGATCCACTTGTACATGGTGAGGAGCACCCACTTTCCTCTGATATgagtaataagtcattcagtcagagtaatctgaaggaGCGTCAGCGCGTACGTAACCGAGAGCGTCCATTTTTCTGCGATGTGTGTAAGAAACCGTTCAGTCGGCAGAATAATCTGAAGGTgcaccaacgcatacatagtggggtgcggccatttttctgtgaagtgtgtaaaaaATCATTCAGTCAGAATAGTCTGAAGGAACATCAccgcatacatagtggagagcgGCCATTTTCATGTGATGTGTGTAAGAAGTCATTCAATCGGCATAATAATCTGAAGGCCCATCAACTTATACATAGTGGAGAGCGGCCATTCTCCTGCGAAGTGTGTAGTAAATCATTCAGGCATCCAAGTCATCTGAAGGAACATctacgcatacatagtggagagcgGCCATtctcctgtgatgtgtgtagtAAATCATTCAGGCATCAAAGTTGTCTAAAggaacatcagcgcatacatagtggggagcggccatactcatgtgatgtgtgtaataaggcTTTCAGCAGTAAGAGTCATCTAAATAGACATCAGAGAGTACACAGTGGGGAGCTGCCGTCCTTTTGTGATGTATGTCATAAATCTTTCAGGAATCAGAGTCTTCTGCAGGAACATCAGTCCATGCATAGTGTAGAGCGAACGTTCTCATGTGATGTGTGTAGTAAGTCTTTCAGCAGTAAGAGTCACCTAAAGCGACATCAGAGCACACATGGTTTGGAGCGGCCATTCTCTTGTGagaaacatgtagcaggccCCTGTAGTGAGACATATTCAGCCTCTTCCCCTGATgcaaatcaggccatgaatATCAAAGTCGAGGAAGTCTCAGATGTAGAAGTGGAGGAGGAGCAGCAGCCTGTGCCAATGACATTTGTAGGAATAAAGGCTGAACATGAGAAACATGTACCAGGCCCCTGTAGTGAGACACATCCAGCCTCTTCCCCTGATgcaaatcaggccatgaatgtCAAAGTCGAGGAAGTCTCAGATGTAGAAGTGGAGGAGGAACATCCTGTGCCAGTGACATCTGTAGGAATAAAGGCTGAACATGAGAAACATGTACCAGGCCCCTGTAATGAGACACATTCAGCCTCTTCCCCTGATGTAAATCAGGCCATGAATATCAAAGTCGAAGAAGTCTCAGATGTAGAAGTGGAGAAGGAGCATTCTGTGCCAATGACATTTGTAGGAATAAAGGCTGAACATGAGAACTGCATGGACTTACAGAAACATGTACCAGGCCCCTGTAGTGAGATATATCCAGCCTCTTCCCCTGATGTGTATCAGGCCATGAATATCAAAGTTGAGGAAGACCCAGTGCTACAAGAGGAGGATGAGGATCCTTTACCAATATCACATCCAGCAGTAAAGGCTGAATGTGAGAGATCACCACATGAACATCATCTTGTAGGTGGTGAGGAGCATCCATTTTCCTACAGTATGAGTAATGAATCATTTGGTGAAAATAATCTGAAGGAGCATCAACTCATTAATAGTGGAGAGCAGCAATtttcctgtgatgtgtgtaagaagtcattcagtcggcatAATAATCTGAAGGcccatcaacgcatacatagtggggtgCGGCCATTCTCCTGCGAAGTGTGTAAGAAATCATTCAGGCATCGCAGTCATCTGAAGGAACATCAGCGTACACATAGTGGAGAGCGGCCATtctcctgtgatgtgtgtaataaatcattcagtcaTCAGACTTGTGTGAAgcaacatcagcgcatacatactggggagcgaCCACACacctgtgatgtgtgtaataaggcTTTCAGCAGTAAAAGTCATCTAAATAGACATCAGAACATACATAGTGCGGAGCTACCGTtctcctgtgatgtgtgtaataaatcattcaggcAAGAGAGTCTTCTGCAGGAACATCAGTCCACACACACTGAGGAGCGACCATtctcctgtgatgtgtgtaataaggcTTTTATCAGTAAGAGTCATCTAAATAGACATCAGAGCACACATAGAGGTGAACTGCGGTtctcctgtgatgtgtgtaataaatcagtCAGGTATCCTAGCCATCTGAAggaacatcagcgcatacataatGGAGAGCGGCCATtctcctgtgatgtgtgtaataaatcattcaggtATCACAATTGTCTGAAGGAACATCAGCGCATGCATAGGGGGGAGCGACCATTCTCCTGtgatgtgtgcagtaaatctTTCAGCACTAAGCGTCATCTGAAGAGACATAAGAGCATACATGGCTTGGAGCGGCCATtctcttgtgatgtgtgtaataaatcattcaggcATCTGTGTCACGTGAAggaacatcagcgcatacacagtGGAGAGCGGCCATTCacgtgtgatgtgtgtaataagtcattcagcaATAAGAGTCATCTAAAGAGACATCAGATCATACACAATAGGGAGCGGCCATTCTCTCAGATGTGTTAA
Protein Sequence: MKHVPGPCSETYPASSPDANQAVNIKVEEVSDVEVEEEPPVPMTFVGIKAEHENCMDLQKHVPGPCNETHPSSSPDANQAMNVKVEEVSDVEVEEERPVPMTFVGIKAEHEKHVPGPCSEKYPASSPDANQAMSVKVEEVSDVEVEEEHPVPMTFVGIKAEHESLLNEDPLVHGEEHPLSSDMSNKSFSQSNLKERQRVRNRERPFFCDVCKKPFSRQNNLKVHQRIHSGVRPFFCEVCKKSFSQNSLKEHHRIHSGERPFSCDVCKKSFNRHNNLKAHQLIHSGERPFSCEVCSKSFRHPSHLKEHLRIHSGERPFSCDVCSKSFRHQSCLKEHQRIHSGERPYSCDVCNKAFSSKSHLNRHQRVHSGELPSFCDVCHKSFRNQSLLQEHQSMHSVERTFSCDVCSKSFSSKSHLKRHQSTHGLERPFSCEKHVAGPCSETYSASSPDANQAMNIKVEEVSDVEVEEEQQPVPMTFVGIKAEHEKHVPGPCSETHPASSPDANQAMNVKVEEVSDVEVEEEHPVPVTSVGIKAEHEKHVPGPCNETHSASSPDVNQAMNIKVEEVSDVEVEKEHSVPMTFVGIKAEHENCMDLQKHVPGPCSEIYPASSPDVYQAMNIKVEEDPVLQEEDEDPLPISHPAVKAECERSPHEHHLVGGEEHPFSYSMSNESFGENNLKEHQLINSGEQQFSCDVCKKSFSRHNNLKAHQRIHSGVRPFSCEVCKKSFRHRSHLKEHQRTHSGERPFSCDVCNKSFSHQTCVKQHQRIHTGERPHTCDVCNKAFSSKSHLNRHQNIHSAELPFSCDVCNKSFRQESLLQEHQSTHTEERPFSCDVCNKAFISKSHLNRHQSTHRGELRFSCDVCNKSVRYPSHLKEHQRIHNGERPFSCDVCNKSFRYHNCLKEHQRMHRGERPFSCDVCSKSFSTKRHLKRHKSIHGLERPFSCDVCNKSFRHLCHVKEHQRIHSGERPFTCDVCNKSFSNKSHLKRHQIIHNRERPFSQMC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -