Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:3669-6732[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.007 0.2 11.7 0.2 1 23 24 46 24 46 0.97

2 20 1.5e-06 4.2e-05 23.3 8.1 1 23 52 74 52 74 0.97

3 20 0.14 4 7.6 11.3 1 23 80 102 80 102 0.97

4 20 1.1e-07 3e-06 26.9 2.7 1 23 108 130 108 130 0.98

5 20 1.4e-06 4.1e-05 23.3 5.9 1 23 137 159 137 159 0.98

6 20 9e-08 2.6e-06 27.1 0.9 1 23 165 187 165 187 0.98

7 20 3.7e-05 0.0011 18.9 9.8 1 23 193 215 193 215 0.97

8 20 5.3e-05 0.0015 18.4 1.2 1 23 221 243 221 243 0.98

9 20 4e-07 1.1e-05 25.1 1.1 1 23 249 271 249 271 0.98

10 20 1.9e-07 5.5e-06 26.0 3.0 1 23 277 299 277 299 0.98

11 20 1.4e-06 4.1e-05 23.3 5.9 1 23 306 328 306 328 0.98

12 20 9e-08 2.6e-06 27.1 0.9 1 23 334 356 334 356 0.98

13 20 3.7e-05 0.0011 18.9 9.8 1 23 362 384 362 384 0.97

14 20 5.3e-05 0.0015 18.4 1.2 1 23 390 412 390 412 0.98

15 20 4e-07 1.1e-05 25.1 1.1 1 23 418 440 418 440 0.98

16 20 1.3e-08 3.7e-07 29.7 1.3 1 23 446 468 446 468 0.99

17 20 5.8e-05 0.0017 18.2 4.9 1 23 474 496 474 496 0.98

18 20 1.9e-07 5.3e-06 26.1 0.9 1 23 502 524 502 524 0.98

19 20 0.003 0.086 12.8 3.4 1 23 530 552 530 552 0.96

20 20 2.4e-06 6.9e-05 22.6 1.7 1 23 558 580 558 580 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.007	0.2	11.7	0.2	1	23	24	46	24	46	0.97
2	20	1.5e-06	4.2e-05	23.3	8.1	1	23	52	74	52	74	0.97
3	20	0.14	4	7.6	11.3	1	23	80	102	80	102	0.97
4	20	1.1e-07	3e-06	26.9	2.7	1	23	108	130	108	130	0.98
5	20	1.4e-06	4.1e-05	23.3	5.9	1	23	137	159	137	159	0.98
6	20	9e-08	2.6e-06	27.1	0.9	1	23	165	187	165	187	0.98
7	20	3.7e-05	0.0011	18.9	9.8	1	23	193	215	193	215	0.97
8	20	5.3e-05	0.0015	18.4	1.2	1	23	221	243	221	243	0.98
9	20	4e-07	1.1e-05	25.1	1.1	1	23	249	271	249	271	0.98
10	20	1.9e-07	5.5e-06	26.0	3.0	1	23	277	299	277	299	0.98
11	20	1.4e-06	4.1e-05	23.3	5.9	1	23	306	328	306	328	0.98
12	20	9e-08	2.6e-06	27.1	0.9	1	23	334	356	334	356	0.98
13	20	3.7e-05	0.0011	18.9	9.8	1	23	362	384	362	384	0.97
14	20	5.3e-05	0.0015	18.4	1.2	1	23	390	412	390	412	0.98
15	20	4e-07	1.1e-05	25.1	1.1	1	23	418	440	418	440	0.98
16	20	1.3e-08	3.7e-07	29.7	1.3	1	23	446	468	446	468	0.99
17	20	5.8e-05	0.0017	18.2	4.9	1	23	474	496	474	496	0.98
18	20	1.9e-07	5.3e-06	26.1	0.9	1	23	502	524	502	524	0.98
19	20	0.003	0.086	12.8	3.4	1	23	530	552	530	552	0.96
20	20	2.4e-06	6.9e-05	22.6	1.7	1	23	558	580	558	580	0.98

Sequence Information

Coding Sequence: ATGTTATTTCCTCTCATTTTCCAGAGTACTTTGAATGAACTTCAGCCTGTGGGTGGTGAGGAGCAACAGTATTCTTGtgatgagtgtggtgattcattCAGTCAACAGCTAATTCTGAGAGCACATCAATATATGCATACTGGGGAGCAGCCATTTTTTTGCAacatgtgtaataagtcattcagtcataaGAGTCATCTGAaaacacatcagcgcatacatacagGGGAGCAGCTATTTTGCTGTGACATGTGTAATAAGTTATTCACTCATCATAGtcgtctgaagacacatcagcacatacatactggggagcggccatttagatgtgatgtatgtaataagtcattcaatcAACAGAGTAACCTGAATGCACATCAGTGCGTACATAGTGGGGAACGGCCATTATTTAGATGTGATATGTGTAATAGGTCATTCTGTAAGCAGAGTACCCTGAaaagacatcagcgcatacatactggggagcaACTGTTTAgatgtgatatatgtaataagtcattcaatcAGTGGGGTACACTGAAGttacatcagcgcatacatattGGAGAGCAACtcttttgctgtgatgtatgtaataaatcattcaatCGACACCataatctgaagaaacatcGGCGTGtacatactggggagcggccatttagatgtgatgtatgtaataattcATTCGGTGAGCAGAATAcactgaagaaacatcagcgcatacatactcAGGAACGACCGTTTGTATGTGATGCATGTAGTAAGTCATTCAGTAATCAGGATacactgaagagacatcagcgcatacatactggggagcggccatttagatgtgatgtatgtaataagtcattcaatcAACGGAGTAACCTGAATGCACATCAGTGCGTACATAGTGGGGAACGGCCATTATTTAGATGTGATATGTGTAATAGGTCATTCTGTAAGCAGAGTACCCTGAaaagacatcagcgcatacatactggggagcaACTGTTTAgatgtgatatatgtaataagtcattcaatcAGTGGGGTACACTGAAGttacatcagcgcatacatattGGAGAGCAACtcttttgctgtgatgtatgtaataaatcattcaatCGACACCataatctgaagaaacatcGGCGTGtacatactggggagcggccatttagatgtgatgtatgtaataattcATTCGGTGAGCAGAATAcactgaagaaacatcagcgcatacatactcAGGAACGACCGTTTGTATGTGATGCATGTAGTAAGTCATTCAGTAATCAGGATacactgaagagacatcagcgcatacatactggggagcggccatttagatgtgatgtatgtaataagtcattcaatcAACGGAGTAACCTGAATGCACATCAGCGcgtacatagtggggagcggccatttagatgtgatgtatgtaataagtcattcaggtGTAAGCGTAATCTGCAGACACATCTGCGCATACATACTGAGGAGCGGCCATTTGTATGTGATTTATGTAATAAGTCGTTCAGTAATCAGGGTGCagtgaagagacatcagcgcacacatactggggagcggccatttgtatgtgatgtatgtaataaggcaTTCCATTGTAAGAGTAATCTGAAGCTACATCAGGGCATACATACCAGGGAGCGGCCATTTGTATGTGATCTTTGTAATAAGGCATTCAGAGGTCATAGTGATCTGAAGACCCATCAGCGTATACACGTTGACATGTGCAGTAAATCATAA
Protein Sequence: MLFPLIFQSTLNELQPVGGEEQQYSCDECGDSFSQQLILRAHQYMHTGEQPFFCNMCNKSFSHKSHLKTHQRIHTGEQLFCCDMCNKLFTHHSRLKTHQHIHTGERPFRCDVCNKSFNQQSNLNAHQCVHSGERPLFRCDMCNRSFCKQSTLKRHQRIHTGEQLFRCDICNKSFNQWGTLKLHQRIHIGEQLFCCDVCNKSFNRHHNLKKHRRVHTGERPFRCDVCNNSFGEQNTLKKHQRIHTQERPFVCDACSKSFSNQDTLKRHQRIHTGERPFRCDVCNKSFNQRSNLNAHQCVHSGERPLFRCDMCNRSFCKQSTLKRHQRIHTGEQLFRCDICNKSFNQWGTLKLHQRIHIGEQLFCCDVCNKSFNRHHNLKKHRRVHTGERPFRCDVCNNSFGEQNTLKKHQRIHTQERPFVCDACSKSFSNQDTLKRHQRIHTGERPFRCDVCNKSFNQRSNLNAHQRVHSGERPFRCDVCNKSFRCKRNLQTHLRIHTEERPFVCDLCNKSFSNQGAVKRHQRTHTGERPFVCDVCNKAFHCKSNLKLHQGIHTRERPFVCDLCNKAFRGHSDLKTHQRIHVDMCSKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -