Csec012268.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptotermes secundus
Gene Symbol
-
Assembly
GCA_002891405.2
Location
NW:5684-32256[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.022 0.63 10.1 2.9 1 22 72 93 72 93 0.95
2 21 1.4e-06 3.9e-05 23.4 0.6 1 23 100 122 100 122 0.99
3 21 1e-06 3e-05 23.7 0.7 1 23 128 150 128 150 0.98
4 21 1.7e-06 4.9e-05 23.1 2.4 1 23 156 178 156 178 0.98
5 21 6.3e-05 0.0018 18.1 0.6 1 23 184 206 184 206 0.98
6 21 6.4e-06 0.00018 21.3 5.1 1 23 212 234 212 234 0.97
7 21 3.1e-07 8.8e-06 25.4 2.3 1 23 240 262 240 262 0.97
8 21 9.1e-07 2.6e-05 23.9 1.0 1 23 268 290 268 290 0.98
9 21 1.7e-05 0.00048 19.9 2.0 1 23 296 318 296 318 0.96
10 21 1.5e-05 0.00042 20.1 5.8 1 23 324 346 324 346 0.97
11 21 7.9e-06 0.00022 21.0 1.5 1 23 352 374 352 374 0.96
12 21 1e-05 0.00029 20.6 1.6 1 23 379 401 379 401 0.97
13 21 8.2e-05 0.0023 17.8 6.2 1 23 407 429 407 429 0.97
14 21 2.5e-06 7.1e-05 22.6 4.7 1 23 435 457 435 457 0.98
15 21 2.3e-07 6.5e-06 25.8 1.9 1 23 463 485 463 485 0.98
16 21 2.4e-05 0.0007 19.4 3.8 1 23 491 513 491 513 0.98
17 21 1.7e-07 4.8e-06 26.2 2.9 1 23 519 541 519 541 0.98
18 21 6.4e-07 1.8e-05 24.4 3.0 1 23 547 569 547 569 0.97
19 21 3e-06 8.5e-05 22.3 1.9 1 23 575 597 575 597 0.98
20 21 8.2e-05 0.0023 17.8 5.6 1 20 603 622 603 624 0.94
21 21 5.1e-06 0.00015 21.6 2.6 1 23 631 653 631 653 0.98

Sequence Information

Coding Sequence
ATGTGTACAGACATACTGAAAGATGAACCTGGTTTTTATAGTGAGTCATGTGTAACATCTCATGATGGAAATCAAGCCATTGATGTAAAATTTCGAAAGGACTCAGATATAGAAGAGGATGATGGTCCTGTTGCAATAACATTTCCTGCATTAAAGCCTGAACATGAGAACAACCTGAATGAACATCACTTCATTCCTGGTGATGAGTTTCCATATTCCTGTGATGTTTGTCACAACTCATTTACTCTTGAAACTACATTGAAGAGTCATTTATGCACACGTAGTTGGGCCCATCCATACacctgtgatgtgtgtaataaaacCTTCAGCAATAATGCAGTTCTGAAGGCACATAAACGTGTACACAGTGGAGAACGGCCATTTTCATGTGGAGTGTGCAGTAAATCATTCAGGCAGCAAGGAAGTTTGAAGGTGCATCAACGCGCGCACAGTGGGGAACGTCCATTTTCCTGTGATGtttgtaaaaagtcattcactaataaaaatgttctgaagaaacatcagcgtatacatagtggggagcggccttTTTCCTGTGttatgtgtaataagtcattcagtcagcaaaGTATTCTGGTGGTACATCAGCGCTTACATAGTGGAGAACGGCCATTTGCCTGTCATATGTGTAATAAGAAATTTAGGCAGCAGAGTAGTTTCAAGCGCCACCTAAGCATACATAGAACAGAGCAGCCATTTTTCTGTAAAGTGTGTACTAAGTCTTTCAGACAGCAGAGTAATTTGAAAGCACATCAGAGTGTACATAGTGGCAAGCGGCCATtttcctgtgatgtgtgtagtAAATCATTCAGGCAGCAAAGTACTTTGAATGTGCATCAGAGCATACATAGCGAGGTGCGATTATTTGCTTGTGATGTGTGCAATAAATCATTCACACGGCATGGTAGCCTGAAGCTACATcgaggtacacacagtgcagaGCGTCCATTTTCCTGTGATAAGTGTAATAAATCTTTCAGGCGGCATGCTCATCTGAAGGTACATCAAACTATACACAGTGCAGAGCGACCATtttcctgtgatgtgtgtaataaatcatttagGTTGCAGAGTAATCTAAAAATACATAAGTATATACATTTTGGACGGCTGTTTGCCTGTGAAATATGTAATAAGGCATTCACTCATAAGAAAGTGCTGATGATACATCTGCGCAGACATAATGGGGAGCTTAAACATTCCTGTTATGTATGTTATAAGCCTTTTAGTTCTCAGAGTTGTCTGAAAaaacatcaacgcatacatagtggggagcgtcCATATGCTTGTcatatatgtaataaatcattcagagACCAGAATTATCTGAAGATACATCATCGAGTACATAGTGGTGAGCGGCCATTTCACTGTGATATGTGTgacaagtcattcagtcagcaaaGCAGTTTGGTGATACATCAGCGAATACATAGTGGGGCCCGGCCATTCTCCTGTGATATGTGTAGTAAGTCTTTCAGACAACTGAATTGTTTGAAGGTACATCAACGCGTACACAGTGGAGAACGGCCATTTTCCTGTGgtttgtgtaataaatcattcaggcAAAAGAGTTATCTGAAGATACATCAACGCACACATAGTGGAgagcggccattttgttgtgatgtatgtaataaatcattcagccAGCAAAGTAGTCTCATGGTACATCAGCGTTTACATAGTGGTGATCAGCCATtttcctgtgatgtgtgtaataaatcattcaggcAGCTAAATAATCTGGTAGTACATCATCGCATTCATAGTGGGGAGCGACCATTTTCCTGtcatgtatgtaataagtcgttCAGACATCAGGGTAGTCTGAAGAAACATGAATGCCTATGTAGTGGGGAGCAGTCATTttcttgtgatgtatgtaataaatcattcgcACAGCAGAGGAGTCTAAAGATTCATCAACACATGCATAAGCGGAAATGTCAATATtcctaa
Protein Sequence
MCTDILKDEPGFYSESCVTSHDGNQAIDVKFRKDSDIEEDDGPVAITFPALKPEHENNLNEHHFIPGDEFPYSCDVCHNSFTLETTLKSHLCTRSWAHPYTCDVCNKTFSNNAVLKAHKRVHSGERPFSCGVCSKSFRQQGSLKVHQRAHSGERPFSCDVCKKSFTNKNVLKKHQRIHSGERPFSCVMCNKSFSQQSILVVHQRLHSGERPFACHMCNKKFRQQSSFKRHLSIHRTEQPFFCKVCTKSFRQQSNLKAHQSVHSGKRPFSCDVCSKSFRQQSTLNVHQSIHSEVRLFACDVCNKSFTRHGSLKLHRGTHSAERPFSCDKCNKSFRRHAHLKVHQTIHSAERPFSCDVCNKSFRLQSNLKIHKYIHFGRLFACEICNKAFTHKKVLMIHLRRHNGELKHSCYVCYKPFSSQSCLKKHQRIHSGERPYACHICNKSFRDQNYLKIHHRVHSGERPFHCDMCDKSFSQQSSLVIHQRIHSGARPFSCDMCSKSFRQLNCLKVHQRVHSGERPFSCGLCNKSFRQKSYLKIHQRTHSGERPFCCDVCNKSFSQQSSLMVHQRLHSGDQPFSCDVCNKSFRQLNNLVVHHRIHSGERPFSCHVCNKSFRHQGSLKKHECLCSGEQSFSCDVCNKSFAQQRSLKIHQHMHKRKCQYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-