Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:6741-9381[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.0014 0.041 13.9 1.9 5 23 12 30 10 30 0.94

2 28 8.7e-07 2.5e-05 24.0 2.5 1 23 40 62 40 62 0.98

3 28 4.1e-06 0.00012 21.9 6.4 1 23 68 90 68 90 0.97

4 28 3.7e-05 0.0011 18.9 2.9 1 23 96 118 96 118 0.97

5 28 7.1e-06 0.0002 21.1 4.0 1 23 124 146 124 146 0.97

6 28 0.00013 0.0038 17.1 2.8 1 23 152 174 152 174 0.97

7 28 5e-06 0.00014 21.6 4.3 3 23 182 202 180 202 0.94

8 28 0.00023 0.0065 16.4 0.4 1 23 208 230 208 230 0.97

9 28 9.9e-06 0.00028 20.7 5.5 1 23 236 258 236 258 0.97

10 28 1.6e-05 0.00046 20.0 0.9 1 23 264 286 264 286 0.98

11 28 1.5e-05 0.00044 20.1 4.4 1 23 292 314 292 314 0.97

12 28 1.9e-05 0.00055 19.8 6.8 1 23 320 342 320 342 0.98

13 28 2.5e-07 7.2e-06 25.7 1.2 1 23 348 370 348 370 0.98

14 28 4.2e-06 0.00012 21.9 4.8 1 23 376 398 376 398 0.98

15 28 1.5e-06 4.2e-05 23.3 4.0 1 23 404 426 404 426 0.97

16 28 1.3e-05 0.00037 20.3 5.5 3 23 434 454 432 454 0.94

17 28 4.7e-05 0.0013 18.5 2.9 1 23 460 482 460 482 0.97

18 28 3.7e-05 0.0011 18.9 2.9 1 23 488 510 488 510 0.97

19 28 1.6e-06 4.6e-05 23.2 1.5 1 23 516 538 516 538 0.98

20 28 0.00025 0.007 16.3 1.0 1 23 544 566 544 566 0.96

21 28 9.1e-06 0.00026 20.8 5.5 1 23 572 594 572 594 0.97

22 28 2.5e-07 7.1e-06 25.7 1.5 1 23 600 622 600 622 0.98

23 28 0.00022 0.0062 16.4 4.4 1 23 628 650 628 650 0.98

24 28 1.2e-06 3.5e-05 23.5 5.7 1 23 656 678 656 678 0.97

25 28 1.3e-06 3.6e-05 23.5 1.0 1 23 684 706 684 706 0.98

26 28 0.00022 0.0062 16.4 4.4 1 23 712 734 712 734 0.98

27 28 2.8e-07 8e-06 25.5 3.3 1 23 740 762 740 762 0.97

28 28 3e-06 8.6e-05 22.3 2.6 1 23 768 790 768 790 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.0014	0.041	13.9	1.9	5	23	12	30	10	30	0.94
2	28	8.7e-07	2.5e-05	24.0	2.5	1	23	40	62	40	62	0.98
3	28	4.1e-06	0.00012	21.9	6.4	1	23	68	90	68	90	0.97
4	28	3.7e-05	0.0011	18.9	2.9	1	23	96	118	96	118	0.97
5	28	7.1e-06	0.0002	21.1	4.0	1	23	124	146	124	146	0.97
6	28	0.00013	0.0038	17.1	2.8	1	23	152	174	152	174	0.97
7	28	5e-06	0.00014	21.6	4.3	3	23	182	202	180	202	0.94
8	28	0.00023	0.0065	16.4	0.4	1	23	208	230	208	230	0.97
9	28	9.9e-06	0.00028	20.7	5.5	1	23	236	258	236	258	0.97
10	28	1.6e-05	0.00046	20.0	0.9	1	23	264	286	264	286	0.98
11	28	1.5e-05	0.00044	20.1	4.4	1	23	292	314	292	314	0.97
12	28	1.9e-05	0.00055	19.8	6.8	1	23	320	342	320	342	0.98
13	28	2.5e-07	7.2e-06	25.7	1.2	1	23	348	370	348	370	0.98
14	28	4.2e-06	0.00012	21.9	4.8	1	23	376	398	376	398	0.98
15	28	1.5e-06	4.2e-05	23.3	4.0	1	23	404	426	404	426	0.97
16	28	1.3e-05	0.00037	20.3	5.5	3	23	434	454	432	454	0.94
17	28	4.7e-05	0.0013	18.5	2.9	1	23	460	482	460	482	0.97
18	28	3.7e-05	0.0011	18.9	2.9	1	23	488	510	488	510	0.97
19	28	1.6e-06	4.6e-05	23.2	1.5	1	23	516	538	516	538	0.98
20	28	0.00025	0.007	16.3	1.0	1	23	544	566	544	566	0.96
21	28	9.1e-06	0.00026	20.8	5.5	1	23	572	594	572	594	0.97
22	28	2.5e-07	7.1e-06	25.7	1.5	1	23	600	622	600	622	0.98
23	28	0.00022	0.0062	16.4	4.4	1	23	628	650	628	650	0.98
24	28	1.2e-06	3.5e-05	23.5	5.7	1	23	656	678	656	678	0.97
25	28	1.3e-06	3.6e-05	23.5	1.0	1	23	684	706	684	706	0.98
26	28	0.00022	0.0062	16.4	4.4	1	23	712	734	712	734	0.98
27	28	2.8e-07	8e-06	25.5	3.3	1	23	740	762	740	762	0.97
28	28	3e-06	8.6e-05	22.3	2.6	1	23	768	790	768	790	0.97

Sequence Information

Coding Sequence: ATGTGCAGTGGGGAGCAGCGATATTCCGGTGATGAGTGTGATAAATCATTCACTCAACAGTGTAATCTAAGGGTTCACTGCAAGACACATCAACACATACATAGTAGGGCgaggccattttgctgtgacgtgtgtaacaagtcattcagtgatgGCAGTAATCTGAAGGTACATCAGCGCATGCATAGTGGTGACTGGCctttttgctgtgatgtgtgtaataagtcattcagtcagaaggttaatctgaagagacatcaatgCGTACATAGTGGTGAGCGGccgttttgctgtgatgtgtgtaataagtcattcagttggCTGAGTGATCTGAAAAAACACCAACGTATACATAGTGGTGAGAAGCctttttgctgtgatgtgtgtaataagtcattcagtagtGGCAGTAagctgaagaaacatcagcgcatacatagtggtgaccggccgttttgctgtgatgtgtgtaataagtcattcagtaatAGCGGTATTCTGAAGCAACATcggcgcatacatagtggcgacCGGCCTGTTTGCTGtgttgtgtgtaataagtcattcagtaggCTGGGTCATCTGAAAAGACACCAACGTATACATAGTGGTGAGAAGCCTTTtagctgtgatgtgtgtatgaAGTCATTCAGTAGTGGCAGTAATTTGAAGATACATCAGGGCATGCATAGTGGTGACCGGCctttttgctgtgatgtgtgtaataagtcattcagtttcctgagtcatctgaagatacaccaacgcatacatagtggtgagaaGCCTTTtagctgtgatgtgtgtatgaAGTCATTCAGTAGTGGCAGTAATTTGAAGATACATCAGCGCATGCATAGTGGTGACCGGcgattttgctgtgatgtgtgtactAAGTCATTCATTAATAGCAGTAATCTGAAGATACACCAACACGTACATAGTGGTCAGAAGCCTTTtagctgtgatgtgtgtaataagtcattcagtacgCTGTGTCATCTGAAAAGACACAAACGTATACATAGTGGTGAGAAGCCTTTTAGCTGTGATGTGTGTACGAAGTCATTCAGTGATGGCAgtaatctgaagaaacatcagcgcatacatagtggtgaccgaccgttttgctgtgatgtgtgtactAAGTCATTCACTGATAGCAGTACTCTGAAGCAACATCGGCGCATGCATAGTGGTGaccggccattttgctgtgatgtgtgtactAAGTCATTCAGTAAAAGCAGTAATCTGAAGGAACATCAGCGTATACATAGTGGTGACCGGCCTGTTTGCTGTgttgtgtgtaataaatcattcagtagGCTGCGTCATCTGAAAAGACACCAACGTATACATAGTGGTGAGAAGCctttttgctgtgatgtgtgtaataagtcattcagttggCAGGTtagtctgaagagacatcaacgCGTACATAGTGGTGAGCGGccgttttgctgtgatgtgtgtaataagtcattcagttggCTGAGTGATCTGAAAAAACACCAACGTATACATAGTGGTGAGAAGCCTTTTAGCTGTGATGTGTGTACGAAGTCATTCAGTAGTGGCAataatctgaagaaacatcagcgcatacatagtggtgactggccgttttgctgtgatgtgtgtgcTACGTCATTCAGTAATAGCGGTAGTTTGAAGATACATCAGGGCATGCATAGTGGTGACCGGCctttttgctgtgatgtgtgtaataagtcattcagtttcCTGAGTCATCTGAAGATACACCAACGCGTACATAGTGGTGAGAAGCCTTTTAGCTGTGATGTGTGTACGAAGTCATTCAGTAATGGCAgtaatctgaagaaacatcagcgcatacatagtggtgaccggccgttttgctgtgatgtgtgtactAAGTCATTCACTAATAGCAGTATTCTGAAGCAACATCGGCGCATGCATAGTGGTGaccggccattttgctgtgatgtgtgtaataagtcattcagtaggCTGGGTCATCTGAAAAGACACCAACGTATACATAGTGGTGAGAAGCCTTTTAGCTGTGATGTGTGTACGACGTCATTCAGTGATGGCAgtaatctgaagaaacatcagcgcatacatagtggtgaccggccgttttgctgtgatgtgtgtactAAGTCATTCACTAATAGCAGTATTCTGAAGCAACATCGGCGCATGCATAGTGGTGActggccattttgctgtgatgtgtgtactAAGTCATTCAGTAATAGCAGTAATCTGAAGATACACCAACGTGTACATAGTGGTGAGAAGCctttttgctgtgatgtgtgtaataaatcattcagttaTAAGGGTAATTTGAGGGGGCAtctgcgcatacatagtgggaagCAGACATAG
Protein Sequence: MCSGEQRYSGDECDKSFTQQCNLRVHCKTHQHIHSRARPFCCDVCNKSFSDGSNLKVHQRMHSGDWPFCCDVCNKSFSQKVNLKRHQCVHSGERPFCCDVCNKSFSWLSDLKKHQRIHSGEKPFCCDVCNKSFSSGSKLKKHQRIHSGDRPFCCDVCNKSFSNSGILKQHRRIHSGDRPVCCVVCNKSFSRLGHLKRHQRIHSGEKPFSCDVCMKSFSSGSNLKIHQGMHSGDRPFCCDVCNKSFSFLSHLKIHQRIHSGEKPFSCDVCMKSFSSGSNLKIHQRMHSGDRRFCCDVCTKSFINSSNLKIHQHVHSGQKPFSCDVCNKSFSTLCHLKRHKRIHSGEKPFSCDVCTKSFSDGSNLKKHQRIHSGDRPFCCDVCTKSFTDSSTLKQHRRMHSGDRPFCCDVCTKSFSKSSNLKEHQRIHSGDRPVCCVVCNKSFSRLRHLKRHQRIHSGEKPFCCDVCNKSFSWQVSLKRHQRVHSGERPFCCDVCNKSFSWLSDLKKHQRIHSGEKPFSCDVCTKSFSSGNNLKKHQRIHSGDWPFCCDVCATSFSNSGSLKIHQGMHSGDRPFCCDVCNKSFSFLSHLKIHQRVHSGEKPFSCDVCTKSFSNGSNLKKHQRIHSGDRPFCCDVCTKSFTNSSILKQHRRMHSGDRPFCCDVCNKSFSRLGHLKRHQRIHSGEKPFSCDVCTTSFSDGSNLKKHQRIHSGDRPFCCDVCTKSFTNSSILKQHRRMHSGDWPFCCDVCTKSFSNSSNLKIHQRVHSGEKPFCCDVCNKSFSYKGNLRGHLRIHSGKQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -