Csec006729.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- lolal
- Assembly
- GCA_002891405.2
- Location
- NW:233085-255864[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.2e-09 6.5e-06 25.3 0.1 2 39 247 284 246 289 0.88
Sequence Information
- Coding Sequence
- ATGTCAGATCTGTGGCTCAAGTGGAATAGTCAGCTGGAACTTTTGAGTTCCTTGGATAATTTGCTTGAGACTGAGAGCTTTGTGGATGTCACTATTGCTGTAGAAGGACAGCTTCTTAAAGCACATCGTGTTGTCCTTTGTGCCAGTAGTCGATATTTGAACTCCATTCTGCGATCTAATACAGCACCACATCCAATAATATTCATGAGGGAtgtaaaatttgtggaaatgaaaacaattttaGACTTCATATATAAGGGAGAAGCATATGTGgcacaagaaaatattcaagGAGTTTTGAAAACTGCAGACGCTCTTAAAATAACAGGACTGTCCAGCATTTCATGGACGGAATCTCCAATGAACTGTGTGCAGGTAGATGAGGCTTCTCAGTGTGACATATCAAACTGCCAGGCTGAATCAAAACCTTCTGACAACTTTAATGTGCAGAGGGAAGCACAAGAGCTGTTGCCAAAGCTGAATGACAATTCACTTTCAGGATATCAGAGCTTAGAAGAAGGAAGTGAACAAGCCTCTAAGAAAGAGACTAATGTTGGTGCAGATACCCAGGAACATATAGGAAAATTAACTGAGAACTGCGAAGCAACAAAAGTGGCACATGTTTCAACATTGGAAGATGGTGAAACACTGATGGTACTGGAAGCACCACCTAATATATCGATCGCCTCTGTCCCTGCGACCCCAGCAAGACCTAAGCCAGCAGCAAGACAGTATACTAAGGAGGATCTTAAATATGCTTTGGAACTGATACATCAGGGTCAGCTGGGAATCAAGCCAGCAGCTAGAGCATTTAACATACCTGCAGCAACTTTACATCATGCAGCACGGCGAAGCAAGATCTCAAGTCCAATGCAGCAAGGAGGAAATCGTGCTGTATCTCACTGCAGTAAAATAAAACCTGCCATCAGTGGACATAAGACCTGA
- Protein Sequence
- MSDLWLKWNSQLELLSSLDNLLETESFVDVTIAVEGQLLKAHRVVLCASSRYLNSILRSNTAPHPIIFMRDVKFVEMKTILDFIYKGEAYVAQENIQGVLKTADALKITGLSSISWTESPMNCVQVDEASQCDISNCQAESKPSDNFNVQREAQELLPKLNDNSLSGYQSLEEGSEQASKKETNVGADTQEHIGKLTENCEATKVAHVSTLEDGETLMVLEAPPNISIASVPATPARPKPAARQYTKEDLKYALELIHQGQLGIKPAARAFNIPAATLHHAARRSKISSPMQQGGNRAVSHCSKIKPAISGHKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370325;
- 90% Identity
- iTF_00396430;
- 80% Identity
- iTF_00396430;