Csec009796.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- lov
- Assembly
- GCA_002891405.2
- Location
- NW:422611-446297[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.39 6.1e+02 -0.3 0.0 25 32 3 10 2 14 0.90 2 2 5.7e-18 8.9e-15 53.6 0.0 1 44 306 349 306 350 0.96
Sequence Information
- Coding Sequence
- ATGGGGTTGTATGGTGTTCCAACTCCCACTGCTCGCAGCTTCTCTTCATCAGATCCAACAGTGGGGCTGGGGACAGGATTGCCTGTATTGTCTCCTTTCTCACCATCCCCTGTACCAAATTATGAACCACCTCTCAAACTTCCACATCTCCCACATATGCCACCTATCTCCTTTAGTGAGAACCTGCCTCCCCCCACTGACCACCGCACCTCACCCCTGCCTCGAAGAAAACAGGCACGACCCCGGAGACGATCAGGGGATCAGTGTGGGGCACAGGATCTCACTAAACCACCAGTGTCTCCAGTGACGGAAACAGCGGAGAATTTATCCATGAAGAAACCAGCACATCAGCAGCATCAGCAACAAAGCAACAGTAGCAGTAGTAACAACACCAGCAATAGTAATAACAATATTAGCAGCAATGGAAATATCACGCCTGCCCCGACGCTTCCTCCTGCTCCTCCAGGAACGCCCGTTACTTCACCTCACCCACTGCTGCCTCCACCATTAAAATCAGAAAACGAAGAGTCTCAGCTGCCGGAAAATGCGCACATCGACATGCACACACCAGACAGGGACCGTGAAAGGGAGCGGGCAGAGTTCTGCAATAGTACAGAGTCTATAAGCCTGCCTCCACCACCTCCGGACCCAACACTTGAAAATTCTACTTTTCCACAACTCCCATCTGTATCAGCTCTTAATATGACGCCTCCTCATGttttctcatTGGATGCTCAGCTTGGTTTCTTTCCTGGCATGGAGAGCTGTCGGAACCCGCTACTGAATGACATTTCAGAGCCAAGAAATGAAAACCACCACATAATAGGAAAACGTAAAAGGAAGATGGCTGTGGTTTCAGTGGGTCGACCAAAGGGGCAGCACAGTGCCCCACGAGGAGGTCCACCACGGTCATGGACCAATGCTGAGCTAACACAGGCACTGCAGCATGTGTGGAACAAAAAGATGACAACTTCGCAGGCATCTCGGATATTTGGCATTCCATACAATAGTTTACTTATGTATGTGCGTGGCAAATATGGCAAGTCGCTCAAGTTGGAGCAACTGAAGAAAGACTGTCTTGGAGGCCCTGGGGATCCCCTTGAGCTGCTGGGACTGGGGCCCATGGGTCCAGTGCCAGggaacaacaacaataacaacaatgcCAGCAGCAAGTCTGGTGCAGGAGATGAACTGTTGGGTCCACCAGGCTCAGAACATGACTTGGTCTCTGTGGGTCCTGGTGGCTTCAACCCTTACTTGCCTGCCAATTACTATCCTGACTTCGGTGCCTCTTTCCCAGTCCCTGTGAACATGATCCACCTGCTACCCCAGTCTGAAAAGAACCGTGAGCTGTTCCCACCCCCTATGCCCCTCCCACTTGATGTGTCTACTGCTGGCAAAGACGACAGTAATGGAGGACGAAAATCACATGAGAACAATGGTTCCATGGAGGAGGAGCATGATGCAGTGCAAACACAACAGCAACCGCCCAAAGAGGACACCACTTCACAGCAACTTCTTGAACAGAATGGGCAGAACTAG
- Protein Sequence
- MGLYGVPTPTARSFSSSDPTVGLGTGLPVLSPFSPSPVPNYEPPLKLPHLPHMPPISFSENLPPPTDHRTSPLPRRKQARPRRRSGDQCGAQDLTKPPVSPVTETAENLSMKKPAHQQHQQQSNSSSSNNTSNSNNNISSNGNITPAPTLPPAPPGTPVTSPHPLLPPPLKSENEESQLPENAHIDMHTPDRDRERERAEFCNSTESISLPPPPPDPTLENSTFPQLPSVSALNMTPPHVFSLDAQLGFFPGMESCRNPLLNDISEPRNENHHIIGKRKRKMAVVSVGRPKGQHSAPRGGPPRSWTNAELTQALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKDCLGGPGDPLELLGLGPMGPVPGNNNNNNNASSKSGAGDELLGPPGSEHDLVSVGPGGFNPYLPANYYPDFGASFPVPVNMIHLLPQSEKNRELFPPPMPLPLDVSTAGKDDSNGGRKSHENNGSMEEEHDAVQTQQQPPKEDTTSQQLLEQNGQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288890;
- 90% Identity
- -
- 80% Identity
- -