Cacu012915.1
Basic Information
- Insect
- Cryptophagus acutangulus
- Gene Symbol
- -
- Assembly
- GCA_963556235.1
- Location
- OY744562.1:932787-934621[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1e-05 0.0012 19.9 3.5 1 21 19 39 19 40 0.95 2 13 0.0002 0.021 16.0 0.4 1 23 48 70 48 70 0.98 3 13 0.18 19 6.6 0.5 1 23 76 98 76 98 0.97 4 13 0.0026 0.28 12.4 4.0 1 23 104 126 104 126 0.93 5 13 0.00091 0.098 13.9 1.8 1 23 132 154 132 154 0.99 6 13 0.0031 0.34 12.2 2.5 2 23 283 304 283 304 0.96 7 13 8.2 8.8e+02 1.4 7.8 1 23 320 343 320 343 0.96 8 13 0.00027 0.028 15.5 0.2 2 23 348 370 347 370 0.92 9 13 1.3e-05 0.0014 19.7 0.1 1 19 380 398 380 401 0.94 10 13 6.1e-05 0.0066 17.5 2.1 1 23 409 431 409 431 0.99 11 13 0.0026 0.27 12.4 2.6 3 23 439 459 438 459 0.98 12 13 0.00033 0.035 15.3 1.0 1 23 465 487 465 487 0.94 13 13 0.0036 0.38 12.0 4.0 1 23 493 515 493 515 0.96
Sequence Information
- Coding Sequence
- atgcaagaAACTACTAAACTGCCCCCTAAAAATAAAGATGAGGAAAAAAGCATCTTCATGTGCAGCGATTGCGGCAAACAATTCAAAACGAAATGCGAATTAACGCACCACATCAACTCAAAATGCGGAACCATCAAACTTTTCACATGCAAAgaATGTGGTCAGCAATTAATGACCGCAGGCTCCCTTTACAACCACATGCTCCGCCACAAAGGCGATCGCAGCTTCATGTGCCGATTTTGTGCCAAACAATTCCTAACTGGCGGCCAACTAAAAGTGCACGAACGAATTCACACTAAAGAAAAAGCGTTCGTTTGCGAGATCTGTAGGAAAGGATTCTGCCATCGGCAAAGTTTGATCACTCACAGCACTCTGCATACAGGCATTAAGCCGTATCAGTGCGAAAATTGCGGCAATGCCTTTAGCTGTGTGGGGAATCTGCTTAAACATAGGAAAACGCATGCGGATACTTGCGGATTGGTCGCACTAACGTCCCATCGCGTTCTGAACCCTTCCACTAAGATTAAAGTTAAGATCAACACGCCTGAGAGTTCGAAGTTGAAGAATAAGAGTGGGGGGGAAGTTAGTATTAAGTTGATAGGTAGCGAAAAGGAGTTGGACGTGGAAGTAGAAGTAGGGGGAGTTAAGAAGGCTAAAATGGAGTTGAAGAAGCAAACTTTGGATGacgattttattattgaaggACAGGAGGAGGAGTTATTTCCAATCGTGAATAATTCATTGGAGAAGTTGGAAGAGAGCAATATTATTGGTAAAATGGAGATTTCCGCTTCGGAGTTGAAGAGTTTTATTGAAGATCGAGCGTTAGcTGGTGCTTCAAAAGCGAAATGCAAATACTGCAGCAAAGAATACACGCAATTCAAATGGCTCTACAAGCACGAAAAGGACCACTTGCAGAACAACGACATCACCAGCAACGAAACCAAAAATCTCCCCTTCAAATGTAGCTGCTGCAAGAAATTCTTCGAAACCAAAAACACTTGTCGCGAACACCAACAAATCGCACACGCTGATATTTTAACGTGCCTCGACTGCGACAAAATATTCGCAAACGTCGATTCGCTTCGCTCGCATCGCGTCGTATTCCACAAAGGCGTCCCGAAAAAGGAATACATCTACATTTGCGAGAAATGCGGcaaagcgttcaaacagaaatCGATGCTACTCATTCATAACGAGCGCAATTGTAAAATCGGCCCGTTTTACAAATGCAGCGTTTGCGCGAAGGAGTTCTCAAGTGAGCACACGCGGAAAGCTCACATGCGAATCCACAACTCCGCCAAACTGCTGCTTTGCAAGTTTTGTGGGAAGAGTTTCCACTGGAAGGGGCAGTTGAAAGTGCACGAGCGCAGTCACACGGGCGAGAAGCCGTACACTTGTTTGTTCTGCCCGAAATCGTTCGCGTATCGGGACAGTTTGCTGACGCATAGCAGTTTGCATACGGGATACAAGCCGCATTTTTGTAAAGGGTGCGGATGGAGGTTTTCCTGTTTAggaaatttaatgaaacatcGCGTTACGCACGCTAGTACTTGCGGAGTTTGGTACCAGGAGAACAAAGGCTGA
- Protein Sequence
- MQETTKLPPKNKDEEKSIFMCSDCGKQFKTKCELTHHINSKCGTIKLFTCKECGQQLMTAGSLYNHMLRHKGDRSFMCRFCAKQFLTGGQLKVHERIHTKEKAFVCEICRKGFCHRQSLITHSTLHTGIKPYQCENCGNAFSCVGNLLKHRKTHADTCGLVALTSHRVLNPSTKIKVKINTPESSKLKNKSGGEVSIKLIGSEKELDVEVEVGGVKKAKMELKKQTLDDDFIIEGQEEELFPIVNNSLEKLEESNIIGKMEISASELKSFIEDRALAGASKAKCKYCSKEYTQFKWLYKHEKDHLQNNDITSNETKNLPFKCSCCKKFFETKNTCREHQQIAHADILTCLDCDKIFANVDSLRSHRVVFHKGVPKKEYIYICEKCGKAFKQKSMLLIHNERNCKIGPFYKCSVCAKEFSSEHTRKAHMRIHNSAKLLLCKFCGKSFHWKGQLKVHERSHTGEKPYTCLFCPKSFAYRDSLLTHSSLHTGYKPHFCKGCGWRFSCLGNLMKHRVTHASTCGVWYQENKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -