Cacu009861.1
Basic Information
- Insect
- Cryptophagus acutangulus
- Gene Symbol
- -
- Assembly
- GCA_963556235.1
- Location
- OY744559.1:11173852-11178103[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.036 3.9 8.8 3.8 3 23 180 201 179 201 0.94 2 21 0.59 63 5.0 1.0 1 22 322 343 322 343 0.94 3 21 0.91 98 4.4 0.4 1 23 372 395 372 395 0.93 4 21 0.24 25 6.3 0.9 5 19 405 419 404 421 0.95 5 21 0.36 38 5.7 1.5 1 22 428 449 428 451 0.89 6 21 0.00022 0.023 15.8 0.2 2 23 533 555 533 555 0.95 7 21 0.036 3.9 8.8 0.0 1 23 585 606 585 606 0.95 8 21 0.00052 0.055 14.6 0.2 3 23 611 631 610 631 0.97 9 21 0.00034 0.036 15.2 0.2 1 23 661 683 661 683 0.96 10 21 0.13 14 7.1 0.7 1 23 694 717 694 717 0.93 11 21 0.002 0.22 12.8 1.3 2 23 731 752 730 752 0.97 12 21 2e-06 0.00022 22.2 4.8 1 23 770 792 770 792 0.98 13 21 2 2.2e+02 3.3 0.2 3 23 815 836 815 836 0.91 14 21 0.00013 0.014 16.5 1.5 3 23 858 878 856 878 0.95 15 21 0.00048 0.052 14.7 0.2 2 23 892 914 891 914 0.96 16 21 0.00012 0.013 16.6 0.2 1 23 935 957 935 957 0.95 17 21 1.6 1.7e+02 3.7 0.0 1 23 980 1003 980 1003 0.93 18 21 0.87 93 4.5 1.0 2 23 1014 1035 1014 1035 0.95 19 21 0.00046 0.05 14.8 0.4 1 23 1071 1094 1071 1094 0.96 20 21 0.00034 0.037 15.2 0.4 3 23 1102 1122 1100 1122 0.97 21 21 0.00055 0.059 14.5 0.2 1 23 1140 1163 1140 1163 0.96
Sequence Information
- Coding Sequence
- ATGGCAGACTCGAGATTCGGTCAATTCCAGTCGTGCTGCAGATTGTGTCTATCGGACAAATTGGATACGTTGAAGTCGGTGTTCGATGATGCTACCGCTGATCCCACCTTACAGACAAAGATTTCGTCGACTCTTGCGATTGAGATTGTACCCAACGACAAACTATCAATATTGGTCTGCAACGCATGCATCAGCACCGTAGAAAACTGGCGCAAATACAAGAAACAATGCTCCCTCAATCAAAACAAGCTCGAAGAATGGATGACTCAGACTCCAACGTTGGCCGATCTGaGCATCCAGATAAAAGAGGAACCGATCGCGGTGGACGAGGAAGAAATGGTTGAACAACCATCAATATTAGAACCGCCACCAGAGGAAGAAGAATTACCGCCTGCTCCtgtcaatttgaaaaaagagTTGCCGGAAGAGGATCCGCCGATTTTGACGCCGTATCTTGCGCCGGTTAAGCAGCAGCCTGAAGAAGAAGCACCGAGCCCGTCGATTATATTAGGGCCTGACAATAGCCTGGATAGAAACTGCCGCATCTGCGACAAACTATTCAGCTCGCACTACAATCGCAAAAAGCACGAGAAAAACATCCACGGCATCTCCAACGGTAAGTCGATCTCGTCGGCAGGTTCGAACAGCATGGACCACGACGACCGCTCGCAAAACTCGATGAACTCTCAGGGAAGTATCGCTAAAATCGAACCAGATACCAAAACTATATTCAATCCGGAACAGGAGAAAATCCTATTCGCCGCCGGATTAAAGTTACTAAAAGCCAACGACACTCCAATCGCGTTCGAACCCCTATCGAAAGTGGAGCTGAGTTACGCCGAGAAATGCCGAGCGGTCGTAACGATGTTTGCGACGTTAGAATGCGCTTGTCACAAAGTCCGACATTCCACGTTGAAGAAACTCGTCGCTCATGTGCGAGCTCAACGGATGTGGTTCCCGATATTCACATGTTACGCTTGCATGATCACGTTCAACGATCGATCGGTTTTCACCCGACATCAGAAACGTTGCAAAAAGCAAACGAACGagaatttgattaaattgtcGAACTTGCGCAAACGAAGCGACGTAAAATGCCGCCTCTATCAGAACTTCAAGTGTAACGCCTGCCGAGCGATCTTCAGTTTGCACGAAGATTACGTGACGCATTTGGAGGAGATCCACTTCGACTTAACATTCCCATACATTTGCTACTGCGACACCACATTTAATAACTTAGATTCCTACAAGAAGCATTCGTACGCTGTGTGCTGCGCTCAATACTGCTGCGACATTTGTCACGTCGTTACGGACACGCTGGAAGAATTCCTGAAGCACGCGGAAGACAAGCACGATCGCTCCGAAGGCTTCAAGATGCTGCAAACGGATAAGTATTACAAGACGCGCAGTTCTTTGCCGCCCGCGCTGCACAAACCGGAGCCGGTCGACGACATCAAGCGAAGCCACTCGATGTACCACAAAGCGCCGACTTTGTATTCCGAGTTGCCCGACACCAAAGCGACCACCGACAGTCCGTTGCAAGGTCCGCGAACTAGTTTGCGGAGACGAAGAGCCCGACCGCAGATTGTCGGGGAGACTTGCCCCGTTTGCAGTAAAACCTACGCGAATAACGGGAATATGTTGCGACATTACATGCAAGTGCATGACACTACCGGCACTTATGCGACGACTTCGTATGCGGCGACTGCGAGTGTGGTGCAGAAGACTGAAGCGGTGGAAGACCAAAGTTTGTACACTTGTCCGGATTGCGGCGGGATGTACAGCGCCGTCGAATGGAAGAAGCATTTGAGTGGTCATAAGCAGCAAGCTTGCGGCGAGTGCGGAAAGATCTTCCAGTTCCAAACGGAGTTGAACCAACATCGCAGTGTGCATTTGAACTTGAAGGTCTATCGCGATTCGAAGACGAAGTCGTATAAGAGTACGATGTTGAGCCCGAATGGGGATGCAAACGATGCGATGCATGATTGCACCGTTTGCGATGCCATGTTCCCATCGCAGGAGGATTTGGAGCAACATGCCCAGTCGCATAACGAGTTGAATGGCGGACGCGAGAAGGGATTCAGTTGCAAGTTGTGCAACTTGGACTTTACGGGGTATGTTACTTTATGGGATCACAACAAGCAGAATCATCCGAATGTTCGCACGCCGCAGTCGAAGGACTTCCCGAAAGAGTGCAAGGTTTGCGGGAAATTGTTCTACACGGCTGGATCGTTCTTCATGCATAAGCAGAAGCATGATCGTGAAACGAAGGCGAGTAAGGCGAAGGAAGAGGACGAGGAGTCTTATCACACTTGTCGCAAGTGCTTCAAAGTTTTCGCGTCGAAGAGTAACTTGCGCTCGCATATGCGCATGCATGGAATTAATCTGAGTCCGGCTACTAAGAGTAGTACTAAAGGGTCGAAGTTGCCGAAGAAGGTTTGGTGTGCTTCGTGTCATGTCGCGTTTGATAATGCGAAAGCGCTGGACGATCATCGAATTGAGGAACACGATGTGAAGCAAATGCCCAAATTGAAGAGCGAAGTGAAGAACGATAATAAGGATGTTTTGGCTTGCGATACGTGCGAGATGACGTTCAATAGCAAGTCGTCGCTGAAGCGGCACAAGGACAAACATGTCCTTGAGGCCAAAGCGACGATGAATAAGGCTTCGGTTTATTGCAAGTATTGCAAGGTTCCGTTCAAGACTGTGCTTGAGTTGAACAGACACATGTTGGTGGAGCACGAAGAGTTGCAAAATAAACTCATGAAGAGTATTAAGAATAAGAACAACGCGGAACGCAATTACAGTTGTCCGATTTGCAAGAAGGTGTTCGGCAGTGCGAACGCGTTGCACGTGCATCAAGGTTGGCACAAGCGCACCAAAAATAACGAGCAAAGCAAAGTGTTGAAATCCCAAAAGAGCGAACCGGTCGAAGTATTCCAATGCAATACGTGTTTGGCGATTCTGCCGAACGATACCGCTTTGCAGATCCACATTTTGGAGAAGCATCGCAATGTGAACGCTGTGGTTTTGATTCCTAGATGTGCGACTTGCAATCTGGATTTCGTCAAGCAAGAGGAGTACGATTCTCATAAGAAGTTCCACGATTTTGTGGAACGGCAGCGGAAGATCGAATCGGCGAAACCCGCGGTGGTACCGCAATCGGCTGATAAGTCGCCGGAGCCCAAGCGCTACAAGCGGACCAAAGGATTCCCGTGCACGTTTTGCGCAGCTGCGTTCAGTCGACAAGATACGTTGAACTCGCATGTTCGGCAGTACCATCAGGATCAAGGCGAGTACGGTTGTACTCAATGCGAACGTGTTTTTGATAAGCAGAATTCGCTCAATATTCATTTGAAGGTGCATGAGAAGTACAAGTCGAACAACTCGGTGGGCAGTTCGTCGAGTATGACGACGTATTCGTGTTCCATTTGTAATATGGGTTTCAATTTGCCGAAGGATCTTCGAGCTCATACAATTAAATCGCATCCCTTCTGA
- Protein Sequence
- MADSRFGQFQSCCRLCLSDKLDTLKSVFDDATADPTLQTKISSTLAIEIVPNDKLSILVCNACISTVENWRKYKKQCSLNQNKLEEWMTQTPTLADLSIQIKEEPIAVDEEEMVEQPSILEPPPEEEELPPAPVNLKKELPEEDPPILTPYLAPVKQQPEEEAPSPSIILGPDNSLDRNCRICDKLFSSHYNRKKHEKNIHGISNGKSISSAGSNSMDHDDRSQNSMNSQGSIAKIEPDTKTIFNPEQEKILFAAGLKLLKANDTPIAFEPLSKVELSYAEKCRAVVTMFATLECACHKVRHSTLKKLVAHVRAQRMWFPIFTCYACMITFNDRSVFTRHQKRCKKQTNENLIKLSNLRKRSDVKCRLYQNFKCNACRAIFSLHEDYVTHLEEIHFDLTFPYICYCDTTFNNLDSYKKHSYAVCCAQYCCDICHVVTDTLEEFLKHAEDKHDRSEGFKMLQTDKYYKTRSSLPPALHKPEPVDDIKRSHSMYHKAPTLYSELPDTKATTDSPLQGPRTSLRRRRARPQIVGETCPVCSKTYANNGNMLRHYMQVHDTTGTYATTSYAATASVVQKTEAVEDQSLYTCPDCGGMYSAVEWKKHLSGHKQQACGECGKIFQFQTELNQHRSVHLNLKVYRDSKTKSYKSTMLSPNGDANDAMHDCTVCDAMFPSQEDLEQHAQSHNELNGGREKGFSCKLCNLDFTGYVTLWDHNKQNHPNVRTPQSKDFPKECKVCGKLFYTAGSFFMHKQKHDRETKASKAKEEDEESYHTCRKCFKVFASKSNLRSHMRMHGINLSPATKSSTKGSKLPKKVWCASCHVAFDNAKALDDHRIEEHDVKQMPKLKSEVKNDNKDVLACDTCEMTFNSKSSLKRHKDKHVLEAKATMNKASVYCKYCKVPFKTVLELNRHMLVEHEELQNKLMKSIKNKNNAERNYSCPICKKVFGSANALHVHQGWHKRTKNNEQSKVLKSQKSEPVEVFQCNTCLAILPNDTALQIHILEKHRNVNAVVLIPRCATCNLDFVKQEEYDSHKKFHDFVERQRKIESAKPAVVPQSADKSPEPKRYKRTKGFPCTFCAAAFSRQDTLNSHVRQYHQDQGEYGCTQCERVFDKQNSLNIHLKVHEKYKSNNSVGSSSSMTTYSCSICNMGFNLPKDLRAHTIKSHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -