Basic Information

Insect: Cryptophagus acutangulus
Gene Symbol: SCRT1
Assembly: GCA_963556235.1
Location: OY744570.1:1136737-1139594[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 2.2e+02 3.3 0.2 4 14 58 68 58 72 0.77

2 13 0.0013 0.14 13.3 0.0 1 23 286 308 286 308 0.95

3 13 1.4e-05 0.0015 19.5 1.5 1 23 316 338 316 338 0.99

4 13 0.00011 0.012 16.7 0.2 3 23 347 367 345 367 0.97

5 13 5.8e-06 0.00062 20.8 1.3 1 23 373 395 373 395 0.98

6 13 0.00015 0.016 16.3 3.7 1 23 402 424 402 424 0.99

7 13 6.8e-05 0.0073 17.4 0.9 1 23 430 452 430 452 0.95

8 13 5e-06 0.00054 21.0 0.2 1 23 458 480 458 480 0.98

9 13 7.2e-07 7.7e-05 23.6 1.2 1 23 486 509 486 509 0.96

10 13 3.3e-06 0.00035 21.5 1.0 1 23 515 538 515 538 0.96

11 13 2.8e-06 0.0003 21.8 2.1 1 23 544 566 544 566 0.99

12 13 0.00011 0.012 16.7 0.4 1 23 572 594 572 594 0.94

13 13 0.0025 0.27 12.5 0.0 1 21 600 620 600 624 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	2.2e+02	3.3	0.2	4	14	58	68	58	72	0.77
2	13	0.0013	0.14	13.3	0.0	1	23	286	308	286	308	0.95
3	13	1.4e-05	0.0015	19.5	1.5	1	23	316	338	316	338	0.99
4	13	0.00011	0.012	16.7	0.2	3	23	347	367	345	367	0.97
5	13	5.8e-06	0.00062	20.8	1.3	1	23	373	395	373	395	0.98
6	13	0.00015	0.016	16.3	3.7	1	23	402	424	402	424	0.99
7	13	6.8e-05	0.0073	17.4	0.9	1	23	430	452	430	452	0.95
8	13	5e-06	0.00054	21.0	0.2	1	23	458	480	458	480	0.98
9	13	7.2e-07	7.7e-05	23.6	1.2	1	23	486	509	486	509	0.96
10	13	3.3e-06	0.00035	21.5	1.0	1	23	515	538	515	538	0.96
11	13	2.8e-06	0.0003	21.8	2.1	1	23	544	566	544	566	0.99
12	13	0.00011	0.012	16.7	0.4	1	23	572	594	572	594	0.94
13	13	0.0025	0.27	12.5	0.0	1	21	600	620	600	624	0.92

Sequence Information

Coding Sequence: ATGTCGGCGGCGATGAGCACTTGCTTCATATGCAACGCCAGCTGCGTGTCGGAACGGAATTCCGTGCAGATTTTCGCGGATGAGTCGAAAACCTGCCTGGAGCGCCCTCTACCCCAACTGTTAAATGAACTGCTCCCGAAAGAAGTCGCCGAATCGTCAACACACTCGCAACACGTCTGCAAaaaatgcttcaaacaacTGGACGAAGTCGAAGAACTGAACCATCGCTTGGACGCGCTCAAATCGCAACTGATGCAAAACTACGAGACAACTGTCGGCACCTCGGAAACGCCCGAAATCAAACCGAAAGAGGAGGCGAATAAGGAGAACGAAATGCCGAAGAAAATCCTGGATATTCCTTCATCGTCGGACGATGACACCGGGCACGAAGCCATGCCGAAGAAAACGTTGCATACGATCGAAGACATTGAGATGGAGTTGGAGAAAATCCACGGCGGGTTACCGGAAGAGGAAGTCGACGAGGAGGCCGCTAATAAAGTGCACGAACTGGACGTGCAGAATTTCACCACGATCATGGAAGGCGATGGCGGCAACTCGACCGATTCCGAGTACGACCCGACTGACGCGCTAATGGACAAGAAAAGCATCGCTCTAGAAGGCGTGCAAATCAAGATCGAGACGACGAACGACGAAGCAAAACCCAACATTTTGAAGAAGAAAATCCTACCTAGCGGCGAAATCGAGCTGAAAAAGGTGGATATGGTGATGGAGTACCCCATGGTGGCCCGCGATGGCAATTTATACACTTGCCTGCTATGCCAAGGGGATGAGACGGTCGCTGGGGAGGCGAAGGCGATCATTGTGCACATGAAACAGGATCATAATACTCGCTTGTATATTTGTGACGTGTGTGGGGCCGATTTCAAGAAGCGCAACGAACTGTCCGCCCATGTGGACGAGCATGTCGCCACGGAAGAGGGCGATTTTCAATGCGAAGTCTGCAACCGGATTTTCAGCAATTTGAGattGTTCCGCATCCATCGTCGTATGCACTACCCGCAAAACAAAGCCTGGGCGTGCGACACATGCGGCAAACGTTACAGCAGCAAAAACTTGCTCGACGAACACGTTAATACCCATACAGGTGTGCGACCCTACATTTGCAAAATGTGCGGCAAGGATTTCGCCAGCAAATACACGTACAAAGCGCACGAGAAGACCCACGAAGTGCGCCCACGTCCCTTCACTTGCATGCATTGCCCGAAGACCTTCCTAAGCCAGCAGAACTTGACACAACACGAACGCACGCATTTGGGAATGAAGGAATTCGCGTGTCATTTGTGCGGCAAGCAATTCGGCTCGGCACATAACCTCGAAGTGCACTCGATCGTCCACACTGGCTACAAACCGTTCGTTTGCGGGTTGTGTGGGAAGAGTTTCGCGCGCAAGGCGGAGATACGCGATCATGAGCGAACGCATACGGGCGAGCGACCGTACCAATGCGAGTTCTGCGGTGCTACGTTCAGCCAAAGGAGTAACTTGCAGTCGCATAAGCGCGCCACGCATTACGACGACAAGCGCTATCGCTGCGAAGATTGCGGGAAGGGATTTAAACGTCGCCGCTTGCTCGATTATCACATGAAAGCGCAGCACACGGGCGAGCGGCCGTTTAAGTGCGAGATTTGCGATGCTACGTTCGTGTATCCCGAGCATTTCAAGAAGCATAGGCGAATACACACCGGGGAGAAGCCGTTCCTGTGCGAAGTGTGCGGGAAAGCGTTTAATAGCCGCGATAATCGCAACGCGCATCGCTTTGTGCACTCCGATAAGAAGCCGTACGAGTGTTTGGGCTGCGGGGCCGGTTTCATGCGCAAGCCGTTGCTTTATCAGCATATGCAGGCGGCTGGGCATTTGAATGACACGATCGTAGTGAACCAGCCCCGAGTGACGACCGATGATGACCGATTGGTGACGTTGAACGAGGATGGGGAGATGGAGCTGGCGGAGGATTCCAAGTTGTATATCGCGGATCGCGATGGGAATGagcatattattattgatgggCAGCAGATTTCGTTTGGGGATGATGCTGATGGAGAGATTGTGGATGAGATCGAGCAAGTGGTGGGGCAGGAGGAGGAGTATGAGGAGATTATCACGAGTGAGGCTTTGGCTGGGACGGAGACGCAAATTATCCAGACACCCGATGGGCCGGTGCAGCTCGTGAAGGTTCGGATACCGAATGATGATGGCGAGGAGGAGGAGGCGTGGATTAAGATTGTGCCCGAGTAG
Protein Sequence: MSAAMSTCFICNASCVSERNSVQIFADESKTCLERPLPQLLNELLPKEVAESSTHSQHVCKKCFKQLDEVEELNHRLDALKSQLMQNYETTVGTSETPEIKPKEEANKENEMPKKILDIPSSSDDDTGHEAMPKKTLHTIEDIEMELEKIHGGLPEEEVDEEAANKVHELDVQNFTTIMEGDGGNSTDSEYDPTDALMDKKSIALEGVQIKIETTNDEAKPNILKKKILPSGEIELKKVDMVMEYPMVARDGNLYTCLLCQGDETVAGEAKAIIVHMKQDHNTRLYICDVCGADFKKRNELSAHVDEHVATEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWACDTCGKRYSSKNLLDEHVNTHTGVRPYICKMCGKDFASKYTYKAHEKTHEVRPRPFTCMHCPKTFLSQQNLTQHERTHLGMKEFACHLCGKQFGSAHNLEVHSIVHTGYKPFVCGLCGKSFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYRCEDCGKGFKRRRLLDYHMKAQHTGERPFKCEICDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLGCGAGFMRKPLLYQHMQAAGHLNDTIVVNQPRVTTDDDRLVTLNEDGEMELAEDSKLYIADRDGNEHIIIDGQQISFGDDADGEIVDEIEQVVGQEEEYEEIITSEALAGTETQIIQTPDGPVQLVKVRIPNDDGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -