Cacu023728.1
Basic Information
- Insect
- Cryptophagus acutangulus
- Gene Symbol
- -
- Assembly
- GCA_963556235.1
- Location
- OY744569.1:6308153-6309449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3e-06 0.00014 22.8 0.8 1 23 104 126 104 126 0.98 2 11 1.1e-05 0.0012 19.8 5.2 1 23 132 154 132 154 0.96 3 11 7.2e-05 0.0077 17.3 1.6 1 23 160 182 160 182 0.98 4 11 3.2e-06 0.00034 21.6 1.7 1 23 188 210 188 210 0.98 5 11 1.5e-05 0.0016 19.5 1.4 1 23 216 238 216 238 0.99 6 11 7.9e-05 0.0085 17.2 1.5 1 21 244 264 244 267 0.95 7 11 2.4e-06 0.00026 22.0 1.5 1 23 273 295 273 295 0.98 8 11 6.7e-07 7.2e-05 23.7 0.1 1 23 304 326 304 326 0.98 9 11 3.4e-07 3.7e-05 24.6 3.8 1 23 332 354 332 354 0.99 10 11 1.8e-06 0.0002 22.3 1.9 1 23 360 382 360 382 0.98 11 11 3.2e-06 0.00034 21.6 3.3 3 23 390 410 388 410 0.96
Sequence Information
- Coding Sequence
- atgaatttaaacaataattttgactTAAAACAAACGTGTCGCTTTTGTTTAACGCAAACCGATGAACTGCACTACCTATTTGCGGAGGATTTCCTTAAAATCTTCAAGGAACTATTAATCCCTATTAAgCTAAACGAAACAGATGATTTACCAAATGGCATTTGCACAAGCTGCATAAACCAAACGCACGCATTCTACAACTTCAAACAAACGGTCCTGCAAGCAGACGAAACCCTAACAACGCAAAGCGAAAATCTAGTCAATGAAACCGAAAATCTAGTCGAGGACAACGAAGCCAGTTCAAACGAGTTCGAATGCCCACTATGCAACAAAACCCTGAAAAGCAAACCTTCCCTAAAACGCCACCTGAAAATCCACAGCGGCGACAAGCCGCACTGTTGCTCGATCTGCAACAAAAAGTTCCGCGAAGCGGGCAACTTGACGAAACACCTACGCAACCACAACGACGACAAGAAACACCAATGCAACGAATGCGGACTGCGATTCTACGAACGCAACAAACTAATCGTGCACACTCGCATTCACACCGGCGAGAAACCATACAGCTGCGACAATTGCTCGCGATCGTTCCGCACGCAAACGCAACTACAAATACACAACCGAGTACACACCCGAGAGAAGCCCTACAAATGCGCGACATGCGAGAAAAGCTTCGCGTACAGCGGCTCGTTCGAAATGCACAAACGCACACATACAAACGAACGCTTGTACGCCTGCCTCGAATGCTCAAAAACCTTCTCGCAGAAAGCGAGCCTCGACAACCACATCCGCTGCATCCACACCCACGAATGCCCTTTCATGTGCAACTACTGCGGCCAAGCGTACCCCACACGGGCGCAATTAACCAACCACTTGCGACATCACACTGGCGAAAAGCGCCCGTTGAAATTCGCCTGCAACATCTGCAATAAGCTTTTCTCCAGTCCGGCTGAGCTTAGAGTGCATGTCCGTACGCATACTGAAGAGCGACCATACCAGTGCGACTTGTGCGGGAAAAGTTTCAAGACACATTCGCAGATGACATCGCATCGGCGGATTCACACCGGCGAAAAGCGATACGTTTGCGAGTTTTGCCACAAGGCGTTCAGGGAGTCGTCGATGTTGAAGAACCATGTGCGGATTCATACCGGCGAACGTCCACATCTGTGTGGGACGTGCGGGTTGAAGTTCACGCAAAGCAGCACGTTGCGAACGCATATGAAAACGcatgaatataattaa
- Protein Sequence
- MNLNNNFDLKQTCRFCLTQTDELHYLFAEDFLKIFKELLIPIKLNETDDLPNGICTSCINQTHAFYNFKQTVLQADETLTTQSENLVNETENLVEDNEASSNEFECPLCNKTLKSKPSLKRHLKIHSGDKPHCCSICNKKFREAGNLTKHLRNHNDDKKHQCNECGLRFYERNKLIVHTRIHTGEKPYSCDNCSRSFRTQTQLQIHNRVHTREKPYKCATCEKSFAYSGSFEMHKRTHTNERLYACLECSKTFSQKASLDNHIRCIHTHECPFMCNYCGQAYPTRAQLTNHLRHHTGEKRPLKFACNICNKLFSSPAELRVHVRTHTEERPYQCDLCGKSFKTHSQMTSHRRIHTGEKRYVCEFCHKAFRESSMLKNHVRIHTGERPHLCGTCGLKFTQSSTLRTHMKTHEYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -