Cacu015103.1
Basic Information
- Insect
- Cryptophagus acutangulus
- Gene Symbol
- -
- Assembly
- GCA_963556235.1
- Location
- OY744563.1:6603834-6606745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3 1.4e+02 4.0 6.9 2 23 147 168 146 168 0.96 2 15 2.1e-05 0.0023 19.0 4.6 1 23 173 195 173 195 0.98 3 15 0.00025 0.027 15.6 4.2 1 23 201 223 201 223 0.97 4 15 0.00099 0.11 13.7 1.0 1 19 229 247 229 248 0.95 5 15 3e-06 0.00033 21.6 0.3 1 23 257 279 257 279 0.97 6 15 3e-06 0.00033 21.6 4.0 1 23 451 473 451 473 0.98 7 15 6.7e-06 0.00072 20.6 4.7 1 23 479 501 479 501 0.98 8 15 0.00023 0.024 15.8 1.9 2 20 509 527 508 528 0.93 9 15 0.0013 0.14 13.3 0.6 1 23 543 565 543 565 0.94 10 15 4.7e-05 0.0051 17.9 5.5 1 23 571 593 571 593 0.98 11 15 9.5e-07 0.0001 23.2 0.5 1 23 600 622 600 622 0.96 12 15 1e-05 0.0011 20.0 1.3 1 23 628 650 628 650 0.98 13 15 3.1e-07 3.3e-05 24.8 0.9 3 23 658 678 656 678 0.96 14 15 1.5e-05 0.0016 19.5 0.1 1 23 684 706 684 706 0.99 15 15 0.091 9.8 7.6 0.6 1 23 711 734 711 734 0.96
Sequence Information
- Coding Sequence
- ATGGATGCACAACTATTAGATTTAAGCACGATTTGTCGGACATGCAAAGGTGTCACCGATAATATGCTGTGTTTGTTTGAAAGTGACGAAAGTTCGAAAGAAAATCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCCATCCAAGTGTCAAGCACAGACGGATTGCCAGCTTTAATTTGCGAACAATGCATCGCACAATTGCGGAAAgcctttattttcaaaaatcaatgCGAAAAAGTTGACGCCAGTTTTAGGGAACATGCGAAAGTCGATCGGATCAAGGAGGAATTGCAGAATACGGAGTTTATAGAATCCCTGAACGTTCTACTAAACGATGATTTTACACCCGCCCCAAAAACCGTCGAAGATCCCTTACCAACCAACCAAATACCCACCGATTACATCCAAATCATGGACAACAATCAAATGATCCTCACATGCCACGAATGCTGCAAAGTGTTCACCACCCTCGAAGGCTTACGATGCCACAAACGAATCCACAGCGGCGTGCTCTTCAAATGCAAACAATGCGACAAAGAGTACACGCGATTGAACCACTTGCAGCGCCACGAACAATCGCACGGCCGCCGAAAAGTGCACGTTTGCCGCATCTGCAACAAAACCCTGACGCGAATGGAGCATTTAAAGCGCCATTTAGTGACGCATTTACGCGAAAAGCCGTTTGCTTGTAAAACGTGCAATCGCGGCTTTAGTCGCATCGAGCATTTAAATAATCACACGCCGCGTTGCAAAGGCGACAACGCCTTCATTTGCAACATCTGCAACAAAGCGTTCAATCGCGCAGACAGTCTCGAAGTGCATAAGAAATTGCACGAAAATATCAATCCGAATTTGCCGACTTTGGATAATCTGGATAGCATTGATCAGCATTATTACGAGATCGATTACGATGAGGAAACGGAGTTGCCGTTTACGGATACGTCGGATGAGGAGGAGGAGAGTGAAATGCCTGAGGCCGAAGCGGAAATTACCGAAGCGGGTAATACTATTGTTTACGAGGAGCAACTTAGTGATCCAGAGGGCGATTTATTGGAATCGAAGTTCAAAGTGGAAGTGGAGATTTTGGGCGATAATTTGGGAAATACGAATACGATGCAAGTTAGTAATTACGAGGCGGGTGCTGGCGAGAGTACGAAATtagaaAAAGACCGCGAATCGGACAGCGCCGATTCGGAATACCTCCCGAAAAAGCTGCCGAAACGCGGCCGAGGCCGTCCGAGAAAAACGATTGGCCAAAAACGTCGCTTCTCCAACCGAGTGTTCGACGAAGACGATTTTGGTGAGTTAGATAAACACGCTCGCATAGAGCATGTCGGTTTAAAAGTGCATAAATGCAACGTATGCGAGAAAGAATTTATAAGAGCCAATCATTTAAAACGCCACATGCTATCGCATTCTATTAATAAACCGTATCGTTGCGGCACTTGCACCAAAAGCTTCAGCAGAAGAGATCATTTGTCGCAGCATCAGAAATTGCATAGTCGGATTTCTGCCGATTGTGAGTGCGAGATTTGCTTCAAGACTTTTAATCGCGCTGATCATTTGGCGAAACATAAAGCGTGCAAGCATGGTATTGGCGAAAAGGTGATCTCAGAGAAAAAGTTCGAATGCAGCATATGCAACAAAGCCTTCACTACCGAAAAGTATCGCGACGTCCACGTGAAAGGACACAGTGGCGAGAAGAAATACCGATGCAAAACGTGCGACAAAAGCTTCTTATCGAAATCTCATTTAACTGAACATATGAAATTCCATAACGACCATTCCAAGAAGTTTTTGTGTTCCGAGTGTGGCCAGCGATTTATTCGCAACGATTATTTGATTATACATATGCGGAGGCATCGCGGCGAAAAACCATTCAAATGCAAGTTCTGCGGCAAAGGTTTCCCGCGGACGACCGATTTAACTGTGCACGAGCGGTACCACACTGGCGAGAAGACTCATTTGTGTACGATTTGCGGGCGAGGATTCGGccgagcGTATAATTTAACGGTGCATATGCGAACGCATACAGGAGAAAAACCGTATCAATGCACGTATTGCGATGCGGCGTTCGCGCAAGGGAACGATTTGAAGGCGCATGTTAGACGACATACGGGCGAGCGATTCCAATGCGAGTTGTGCACGGAGAGTTTCTTGATGGGGTATTTGTTGACGCAACATAAACGGAGCGTTCATGgatTGAATGTAGTGAGCAATATAAGAAGATTGCAGCCCGTTCAAAAATATGACAAAGATGAAAAGCCACCGATTGAGATTCCGTTACCAAAACCGGTCGTGCCTGATGtgtataataatatacaagcCCATTTAACAGCCCAAATGTTGCGCGATAATTGA
- Protein Sequence
- MDAQLLDLSTICRTCKGVTDNMLCLFESDESSKENPRIDEMLMACASIQVSSTDGLPALICEQCIAQLRKAFIFKNQCEKVDASFREHAKVDRIKEELQNTEFIESLNVLLNDDFTPAPKTVEDPLPTNQIPTDYIQIMDNNQMILTCHECCKVFTTLEGLRCHKRIHSGVLFKCKQCDKEYTRLNHLQRHEQSHGRRKVHVCRICNKTLTRMEHLKRHLVTHLREKPFACKTCNRGFSRIEHLNNHTPRCKGDNAFICNICNKAFNRADSLEVHKKLHENINPNLPTLDNLDSIDQHYYEIDYDEETELPFTDTSDEEEESEMPEAEAEITEAGNTIVYEEQLSDPEGDLLESKFKVEVEILGDNLGNTNTMQVSNYEAGAGESTKLEKDRESDSADSEYLPKKLPKRGRGRPRKTIGQKRRFSNRVFDEDDFGELDKHARIEHVGLKVHKCNVCEKEFIRANHLKRHMLSHSINKPYRCGTCTKSFSRRDHLSQHQKLHSRISADCECEICFKTFNRADHLAKHKACKHGIGEKVISEKKFECSICNKAFTTEKYRDVHVKGHSGEKKYRCKTCDKSFLSKSHLTEHMKFHNDHSKKFLCSECGQRFIRNDYLIIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRSVHGLNVVSNIRRLQPVQKYDKDEKPPIEIPLPKPVVPDVYNNIQAHLTAQMLRDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -