Cacu018464.1
Basic Information
- Insect
- Cryptophagus acutangulus
- Gene Symbol
- -
- Assembly
- GCA_963556235.1
- Location
- OY744565.1:8354934-8357572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0003 0.033 15.4 4.1 2 23 151 173 150 173 0.94 2 13 0.00023 0.025 15.7 1.0 1 23 204 227 204 227 0.96 3 13 1.1e-06 0.00012 23.1 0.5 1 23 234 256 234 256 0.99 4 13 3e-05 0.0033 18.5 0.5 2 20 262 280 261 282 0.95 5 13 1.2e-05 0.0013 19.8 0.8 1 23 293 315 293 315 0.97 6 13 0.00058 0.062 14.5 0.2 1 23 325 347 325 347 0.98 7 13 0.00012 0.013 16.6 0.8 3 23 355 375 353 375 0.98 8 13 6.4e-07 6.8e-05 23.8 2.0 1 23 381 403 381 403 0.99 9 13 5e-06 0.00054 21.0 3.6 1 23 409 431 409 431 0.96 10 13 9.7e-05 0.01 16.9 3.5 1 23 437 460 437 460 0.96 11 13 7.7e-06 0.00083 20.4 1.1 2 23 467 488 466 488 0.97 12 13 2e-06 0.00022 22.2 0.5 1 23 494 516 494 516 0.98 13 13 1.4e-05 0.0015 19.6 3.9 2 23 523 545 522 545 0.94
Sequence Information
- Coding Sequence
- ATGGACGAAATCAAGGAGGAATTGCCGACGGAAGAGGGCGATGTGGAAACGGTCGTTTTACAGAATATCCCAATGGGCAGCCAAGAGATTCCGATCGTGTTCAATCAATTCCCGGAGAACGACTCCGACGGCCACATGCAAATCGATTCGATGCAAGGCAATGTGCTGCAAACCTACATAATACAAAACGCAGAGGAATACGAAGAGGGGCATCCGCACCTCGAGGAGGGCCACGAAGTAGAAATCGTCGAAGACGAAGACACCAAAAACGAGACGCATTACATCATCGAGGAAGAAGATGAGGATGAGTACGACGAGGCGATGCAGCCCGATGAAGTGCAAGAGTTCGATCAGTACGAGTTCGAAGATGACGATGCAGACGATCCAAATTACACGGATGCTGATGAGGATGTCAAAACGAAGAAGGAAGTGTTCGATTTGGACGAATTAACCTGCAAAATTTGCCAGAAAGTCTGCAAAACGCAAGCGGGATTAAGAAGACATCATACGGTCAACCATGGCGACGACGACAGCCAAGAGGACCCCCTCACCTTTCAACTATGTCCATGCTGCGGCGAACCATCGGATTCAGCGCATACTTTGGGCGATTTCAAATGCGACAAATGCGAGAAACTGTTCGTCCAACAAAACAGCCTCGATCGCCATTACAGCATCGAACACCCGGACGATGACGCCAATTACGTGTGTTCGCAATGCAAACGCAATTTCGACACTAAGGACGAACTAATCGACCATATGCGCATTCATCCATTGAAATCCGTTAAATGCGAGGGCTGCAATCGCGAATTCTCACGCAAATACCATCTGGACAGACACATCGGACAAACGGGCTGTATGGGCCAAAGCAAAAAGACATTCGACTGTCGCGTTTGTTCACGCTTCTTCACTCGCAAAGATAATCTGGCTGAACATTTGAGGGCGCACGCGggacaaataaaaaaaaagaaatgttttatCTGCGAATTCTGCCAGAAGGAGTTCCAGGGCCTTGCGCTATTAAGCATTCACATTCGGACACACACAGGAGAGAAACCGTACGGTTGCGACCTATGCGAGAAAAAATTCCCATCTAGTGGTGCAATGAAGAAGCACCGACGTAAACACACTGGCGAAAAGCCATACACTTGCTCTAAGTGCGAGAAAAAGTTTGCGGCCAAAGAGACGCTAAACCGTCACATGCGGACTCACACTGGCGAAAAACCCCATCAATGTCAGTTTtgtggtaaaagtttcattcaGGCATCGCAATTGCGAGCCCACATTTTCCACCACACTGGCGAAAATGCGTACACTTGTCCCCATTGCAATCGCGCCTTCAATCGGAAACTAAGACTGACTACgcatattaaatttatgcACGAGGGTGCCGAATTATTGAAATGTTCGCAATGCGACAAGACGTTCTTCCGCAAAGAAGATGTGGCACGTCATATGTTGAGTCATAGCGGCGAGAAACCATTCCAATGCGACGAATGCGACAAGGCCTTCGCAGTGCGTTCCTCACTCAAACTCCACAAGCTGACCCATCGCCGAGAACCGCCTTGCAGTTGCGACACGTGCGGCCGTGCATTCATCCGCCAGGACTGCTTGATGCGCCACATGCGCGCTAAACATCGCGATGTGCTCGAAGACATCATGGCCAATGCCGAAAAGAAGCGACTCCAGCAGCAATTGCTAAGCGCAGCCACCGATGCTGCTCTAAAGAACGGAACGGAAAACATCGTTTGGAACGAGTTGAGCTTGACTGAATCGATCAAAGAATTGCTTACGCTGCTGGTCGACGATGAATGTCTAAAGGATTTCGGCTATCCCGATGCGCCCGTTGACAAGGTGCTTGATTCGGTGATTAAGCGTTGCGGGCACAAGCCCGCGTCGAACGAGGATTTCGATTATATCGGTCGCATGCGTGAGAATGCCAAGTTGCTGTTCACTGTCGTAATTGATGATGAGGCCGTCAAGGAGCTGTTGAATAATCAAACTGTGGATGAAGTTATTTTGCACGTGTTGCGATTGGCAAAGAAGCAGAGTTTGGCTGTTGAGGAAGATATGGAAGAGGAAGAAGAGGTGGAGGAGGAGATGGAAGAGATAGAGGAAGAAGATGATGATtag
- Protein Sequence
- MDEIKEELPTEEGDVETVVLQNIPMGSQEIPIVFNQFPENDSDGHMQIDSMQGNVLQTYIIQNAEEYEEGHPHLEEGHEVEIVEDEDTKNETHYIIEEEDEDEYDEAMQPDEVQEFDQYEFEDDDADDPNYTDADEDVKTKKEVFDLDELTCKICQKVCKTQAGLRRHHTVNHGDDDSQEDPLTFQLCPCCGEPSDSAHTLGDFKCDKCEKLFVQQNSLDRHYSIEHPDDDANYVCSQCKRNFDTKDELIDHMRIHPLKSVKCEGCNREFSRKYHLDRHIGQTGCMGQSKKTFDCRVCSRFFTRKDNLAEHLRAHAGQIKKKKCFICEFCQKEFQGLALLSIHIRTHTGEKPYGCDLCEKKFPSSGAMKKHRRKHTGEKPYTCSKCEKKFAAKETLNRHMRTHTGEKPHQCQFCGKSFIQASQLRAHIFHHTGENAYTCPHCNRAFNRKLRLTTHIKFMHEGAELLKCSQCDKTFFRKEDVARHMLSHSGEKPFQCDECDKAFAVRSSLKLHKLTHRREPPCSCDTCGRAFIRQDCLMRHMRAKHRDVLEDIMANAEKKRLQQQLLSAATDAALKNGTENIVWNELSLTESIKELLTLLVDDECLKDFGYPDAPVDKVLDSVIKRCGHKPASNEDFDYIGRMRENAKLLFTVVIDDEAVKELLNNQTVDEVILHVLRLAKKQSLAVEEDMEEEEEVEEEMEEIEEEDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -