Cmon012044.1
Basic Information
- Insect
- Cryptolaemus montrouzieri
- Gene Symbol
- -
- Assembly
- GCA_013387265.2
- Location
- JABFTP020000042.1:1954751-1955977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00012 0.032 16.4 3.9 1 23 115 138 115 138 0.97 2 10 0.0038 1 11.6 0.6 1 23 144 167 144 167 0.96 3 10 3e-05 0.0083 18.2 0.7 1 23 173 196 173 196 0.95 4 10 0.0013 0.36 13.0 0.9 1 23 202 225 202 225 0.96 5 10 0.00014 0.037 16.1 1.0 2 23 236 258 235 258 0.97 6 10 0.0013 0.36 13.1 3.2 1 23 263 286 263 286 0.97 7 10 9.6e-06 0.0026 19.8 2.6 1 23 292 315 292 315 0.98 8 10 1.7e-05 0.0048 19.0 2.7 1 23 321 344 321 344 0.98 9 10 1.2e-05 0.0032 19.5 0.8 1 23 349 372 349 372 0.98 10 10 5.5e-05 0.015 17.4 1.7 1 23 378 401 378 401 0.97
Sequence Information
- Coding Sequence
- ATGGCTTTTTCAACAACACCAACCTCTATTCCAGAAGTTAGTGAACTAgaaaacaaaagttttgttAAGCAATTTATTGATGCAGAACTTGAAGTCTGCGTAAAACAGGAATGGATTAATGAAGAAGTAGTAATTTCGGACTTAGAGGATTCTATAAAGTTTGTTATTCATTACTTACTAGATTTAGgtaataattcgataaatttcagATCTGAGCCTTTAGAGCATCCAGAAAATGTAAGTACTGGAAACACAGAAAGAAAAGAAAGTGAAACTTCTGCAGATTTAAAAGAAGAAAAGTTATTCAAAGATATTAGTGAAAACCAAGCAACTCAAGAAAGTTTTAAATGCAGTCAATGCGATTATCATACATCACTGAAGAGCAATCTTAAACAACATATAAATAATTCACATATTGTTATAAAAAATTACTCTTGTAGGTTCTGTGATTATCAAGCGAATTACAAAGGTTCACTCAAAGATCATATGAACGGCGTACATCttggaataaaaaatttcaagtgtACTCAGTGTGATTATCAAGCGACTGAAAAGAGTAATCTTCAAAGACATATAAATGACATACATCTCAGAATAAAGAAGTTCAAATGTGACCAATGTGACTATCAAGCAGCTCAAAGAGTTCATCTGAAATCTCATGTAATGAACGTACATGACAAAAAGAAAGAACAGCGTGGTATCAAAAAATGTGGTCAGTGTGATTATGAAGTTGCGAATAAACGTAAACTACAAAAACATATGAAAAGTGTACATCCTAGTGTATACTTTAAGTGTAATTATTGTAGTTATAAAGCAAGTCGAATAGAGCATCTCCAAAGTCATGTTAAAAGTACACatctcaaattaaaaaattataaatgtgaCCACTGTGATTACGAAGCATCTCAAAAAGGGAACCTCAAACATCATATTAACAGTGTTCATCTTGGAATTAGAAGATTTAAGTGTGATCATTGTGACTATCAATCACCTACAAAGTATAGTTTAACACAACATATGAACAGTATACATCTCGGTATAAATTTTAAGTGTAGCCAATGTGACTTTCAGGCTTCTCGAAAAGGTAATCTCAAAACTCACATCAGGATCGTGCATTTAAAAAAAAGAGACTTTAAATGTGAGCAGTGTAATTATAAAGCATCTCAAAAGGCTAATCTTAATCAACATTACAAAAGTTTACATAGCAAAATCAAGAATGGCAAATAA
- Protein Sequence
- MAFSTTPTSIPEVSELENKSFVKQFIDAELEVCVKQEWINEEVVISDLEDSIKFVIHYLLDLGNNSINFRSEPLEHPENVSTGNTERKESETSADLKEEKLFKDISENQATQESFKCSQCDYHTSLKSNLKQHINNSHIVIKNYSCRFCDYQANYKGSLKDHMNGVHLGIKNFKCTQCDYQATEKSNLQRHINDIHLRIKKFKCDQCDYQAAQRVHLKSHVMNVHDKKKEQRGIKKCGQCDYEVANKRKLQKHMKSVHPSVYFKCNYCSYKASRIEHLQSHVKSTHLKLKNYKCDHCDYEASQKGNLKHHINSVHLGIRRFKCDHCDYQSPTKYSLTQHMNSIHLGINFKCSQCDFQASRKGNLKTHIRIVHLKKRDFKCEQCNYKASQKANLNQHYKSLHSKIKNGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -