Cmon006369.1
Basic Information
- Insect
- Cryptolaemus montrouzieri
- Gene Symbol
- -
- Assembly
- GCA_013387265.2
- Location
- JABFTP020000021.1:14983336-14997109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0038 1 11.6 0.1 1 19 267 285 267 291 0.92 2 14 1.1 3e+02 3.9 2.8 3 19 296 312 295 314 0.97 3 14 0.013 3.5 9.9 6.5 1 21 324 344 324 346 0.95 4 14 0.016 4.4 9.6 0.1 3 21 364 382 364 383 0.96 5 14 0.0031 0.84 11.9 0.9 2 23 390 411 389 411 0.96 6 14 2e-05 0.0053 18.8 0.8 1 23 417 439 417 439 0.97 7 14 8.9e-06 0.0024 19.9 1.2 1 23 446 468 446 468 0.97 8 14 4.3e-05 0.012 17.7 0.5 1 23 473 496 473 496 0.94 9 14 0.0043 1.2 11.4 2.2 1 23 509 532 509 532 0.96 10 14 4.7e-05 0.013 17.6 0.2 1 23 539 561 539 561 0.97 11 14 7.4e-07 0.0002 23.3 0.4 1 23 567 589 567 589 0.97 12 14 1.5e-06 0.00041 22.3 6.6 1 23 595 618 595 618 0.98 13 14 1.3e-06 0.00034 22.5 0.7 1 23 624 646 624 646 0.97 14 14 3.6e-05 0.0098 18.0 1.0 1 23 653 675 653 675 0.98
Sequence Information
- Coding Sequence
- ATGGCACCGCCAATAATCATACaagatttcacaaaaatatgCCGATGCTGCATGGAGGTTGCATCTTATGACATTTTCAAAACATATTTCGAAAACGAACCGCTATCTAAGCTTTTGCTTACATGTACGAACCTCAGAGTTCCAAGAAATGATACCCTACCCAAAAATATTTGCCAGTCCTGCCTGCAACAGTTGATATCTGCATATATCTTCAATCAAAAGGTTTGCAAAACTCAAACAGCCATTTGTGAGATTGCTAAAGTCCTCGATAAggcaaaattcaagaaaaatgttaatatttcaaGTGATCATGATTACCATAATGCAAAGAGAAATAAGGGCTTGAAACAGAATCTAGAAATGATGGAACGAACTGAAGAGCAAGATGCAGCTGAAAATATTACCCCTATAAAGGTTGAAATGGATTCCAACGAAGACGAATATTTGGAAGAACACACTCAGCATATGCAAGTAGACGGTACGGAGGTTAAATATATCAAGCAGCAAGGAGGCGATGAAGAACAAGAATATTGGCTGGAAGAAGCGGCCGAAGGTGAAGGAGAAGCTGTTTTCCATACAGCTGATGGTGAAGGACAGCCTATCGAAGGCTACGATGAAATGAACAAcatatttgaaactgtaaaaGTAATCAATCCACTTGCTCAGTTTCAAGAAGCTAACTACATAGAAGAAGAAGGCCAAGAGGAGGATAGAGAAGAGTATGAAACTTTGGAACAATATGAAAATGGGGAAACAGAAGAGCAGCAAGTAGTCATGCGTAGACCAAAGAAAAAAGTGCATATCTGCCAGGTTTGCAGCGAAGCGTTCGCTACTGCTCGCCAGTTACAAGTACATTCAGAAGAAGTTAACCATCCCCAAAAATTTTGTACCACCTGTTACGAGTTTTTCCATAGTTACTCGGCCCTGATCAAGCACTGTATGGATACCAAACATCCCCGTCCGCAGATGTTCAAGTGTCCTTATTGTTTCAAAAAGTGCGATAACAAGAAAACGTTGGTGGCGCACGTAAGATGCCACGTGAAGTCGAGAAATGTCAAGGTGGTGAAGGACAAGGAAGGGAATCTGGGTTGCCAGATCTGTAAAACCGCCTACGCAAATATGTACGATCTACGTCAGCACTACAAGGAAAACGTCGAAAGCCACTTGACTTGTAGCATTTGCCTTCGTAGATTTTCGGCCTTGACCAAACTGAAGAACCATTTGAAAGCGCATTCCAATGAGAAACCACACGAGTGCCAAATCTGCGGGTTGAGATTCAACCTCGAGAACAACTTGGAACGTCATTTGAAGATCCATGCACAAGATGTGAAAGCTTATAGATGTCAATATTGTCCTAAAGTTTTCACCAGGCGACTTATGCTTGAACAACATGAAAAGTTACATGGAACCACCAACTACCTCTGCACGGAATGTGGCAAAGTGTTTACATCAGGAGGATTCTTGAAGAAACATGTTGAACGTTACCATCTCGGTTTGGCTAATCAAAAAAATCAACGTGGTCCACATGAATGCGAGCTATGTGGAAAAGTGCTTTCGTGCAAAGCTACCCTTTACAGTCACATGCGAAACGTTCATGAAAAGACGCAGAAATTATTTCCCTGTGTGATTTGTGGAAAAGTATTGAAAACAAAGACGTCTTTAGAATTGCATGTGAATTATCACACTGGAAATTGTCCCTTCAAATGTGACATATGTGGAAAAGCATTCACCAACGCTACTACTTTGAAGAGTCACTCATTGATTCACACGGATGAAAGGCCTTACTCTTGTCATATCTGtcacaaaacattcaaacagAAGCCGCATTTGAACACGCATATCTTGACGATTCATACTGGAATCAAACCTTTTGCTTGTTCGTACTGTGACAAAACTTTTGCGCTTAATGGGAACTTGTCTCAGCATTTAAAAACTCACACTGGTTGCAAGTCACCATTCGTTTGCTCCGTTTGTAATAAAGCCTTCTATTTCGCTAGTAGACTCAGGAagcatgaaaaaattcatatgaaataa
- Protein Sequence
- MAPPIIIQDFTKICRCCMEVASYDIFKTYFENEPLSKLLLTCTNLRVPRNDTLPKNICQSCLQQLISAYIFNQKVCKTQTAICEIAKVLDKAKFKKNVNISSDHDYHNAKRNKGLKQNLEMMERTEEQDAAENITPIKVEMDSNEDEYLEEHTQHMQVDGTEVKYIKQQGGDEEQEYWLEEAAEGEGEAVFHTADGEGQPIEGYDEMNNIFETVKVINPLAQFQEANYIEEEGQEEDREEYETLEQYENGETEEQQVVMRRPKKKVHICQVCSEAFATARQLQVHSEEVNHPQKFCTTCYEFFHSYSALIKHCMDTKHPRPQMFKCPYCFKKCDNKKTLVAHVRCHVKSRNVKVVKDKEGNLGCQICKTAYANMYDLRQHYKENVESHLTCSICLRRFSALTKLKNHLKAHSNEKPHECQICGLRFNLENNLERHLKIHAQDVKAYRCQYCPKVFTRRLMLEQHEKLHGTTNYLCTECGKVFTSGGFLKKHVERYHLGLANQKNQRGPHECELCGKVLSCKATLYSHMRNVHEKTQKLFPCVICGKVLKTKTSLELHVNYHTGNCPFKCDICGKAFTNATTLKSHSLIHTDERPYSCHICHKTFKQKPHLNTHILTIHTGIKPFACSYCDKTFALNGNLSQHLKTHTGCKSPFVCSVCNKAFYFASRLRKHEKIHMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -