Cpra000693.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000004.1:580903-583764[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.6 8.4e+02 1.3 0.5 1 9 361 369 361 383 0.69 2 12 3.6 4e+02 2.3 0.6 2 20 384 403 383 405 0.87 3 12 2.5e-06 0.00028 21.6 2.3 2 23 452 473 451 473 0.97 4 12 2.7e-05 0.003 18.4 0.4 1 23 479 501 479 501 0.98 5 12 0.00042 0.046 14.6 2.4 1 23 507 529 507 529 0.98 6 12 5.1e-06 0.00056 20.7 1.4 1 23 535 557 535 557 0.98 7 12 0.00029 0.032 15.1 1.3 1 23 563 585 563 585 0.98 8 12 3.1e-07 3.3e-05 24.5 0.5 1 23 593 615 593 615 0.98 9 12 0.005 0.55 11.3 0.2 1 23 621 643 621 643 0.94 10 12 1.6e-05 0.0017 19.1 2.2 1 23 649 671 649 671 0.98 11 12 2.2e-05 0.0024 18.7 0.6 1 23 677 699 677 699 0.98 12 12 0.0021 0.23 12.4 4.8 1 23 705 727 705 728 0.95
Sequence Information
- Coding Sequence
- ATGGCCGTCGTCGAGGAATTCGATTACCTGTGTCGCTTGTGCGCGACAAAGACTGGCATTCTTATGGGCCTGCCGATCTTTGAGGCCGGCGACAAAATGCGGAATATTGACAAAAAAATCGCCGCGTGCCTACCCGTCCAGGTTTCCATAACGGATCAACTTCCAAAGGTAGTATGCGAGGAGTGTGCGTATAAGTTGGATCAATTATTTGACTTTCGTGAGACATGCCTGCACACGGAGGGGATGTTTATGGAAATGCTCAAGGAAATTTGTAAGGAGGAAGTTGTACACATATCAGAGCATGATTTGGGAGAAGTCGGAGAGATGAGCATTAGCAGGATTCAGAGAAATATTGACAGAATACAGAACAATATTGAGGATGTTCAGAGTCACGCCAATGTTTCAAGTCATGAGACGGCAGAACCAACTATACACACGATGCAAGTTATGGATGAGATGGATTTGGCAGGAGGTGAGCAAGTTGTGACGCAAGAGGAAATAGGGCAGCAGGATCCTGACATTGAAGTAACAGACATTGATTGTCTGGATGGAGAAACTGTTAGAATGGTTGACGAACACATAAGAGAAGTATCGAATCACCAAATTGCAATGCATCTTGAGGGAGACATGACTGTGGTTGGAAACTTAACAGTCAGCGGTCATTTGAGTCAATTAGGCATAAATTATGTAACCTCTATCAACCCCGATGATCAGAACAGGGAACAAATAGTTCATTATTGTGAAAATGTGAAGTATGAACCGGTCCCTATAAAGCAAGAATATCAGAGGCTGCAGGAACGACTGACAAACGAAGAAGCGACACACGTTCTAGAAAATAATGTTACACCTGAAGGATTTGCGCAGTCTCATCCAGAAACTGAGAGTGAGATAGAAGAGTCCGTTATTAGTGAGAGCGAGCGTGGGAATATTAGCACAACTCATTCGAACGTATTACCATCTACGAGTCAAGTGACTGCCGAAAATTCTGAGATAATGGTAGAGTATACTAAACGAGCAAAGCATACGTTGCTAGAATCAATTCTAAACAATCCGACCGTCGATGAGACAGGTTCTCATTGGTACGTTTGCCCATTTTGTAATGAGGCAGCATTAGAAACGAACAATTTAGCGGCCCACTTCGAGCAGCACTTTTGCGGCTGTCAGTGTGGCCTCTACTTTACCAGTGTCGAAGTACTGAATATGCACAAGCAACAATGCGACGTGCTCAAGACTAAAGTGGttatgaaagagaaaaagactGTTGAAGCAGAATTACCGACTACGCAAAACAATATTGAGACGACGAACGATCAAAAGAAGCAGCCGACCGTTAGGCAAAAATGGACGCCAAAAGTTTGCACGCAATGTGGCAAGCAGTACAGAACGAATTACAAACTCCAGGAACATATGCGCAAGCACACGGGCGAGAAACCATTTCAGTGCTCCACGTGCGAGAAAGCTTTCCGCAGCAAAATCGGCCTCGCCCAGCACACAGCCACGCACACGGGACAGTTCGACTACAACTGCTCAACATGCGGCAAGGGTTTTCAGTGCAAGAGCTATCTCATCGTTCATCAACGAGTACACTCCGATCTTAAGCCCTACCCGTGCAACACATGCGGGCAGAACTTCAAGACGAAGCAATCTCTTTTAGATCATCAAAATCGTCATCTCGGCGTGAAACCGTACATGTGCGAGATTTGTGGCCGAGGCTTCATAACGAAGGGCCTCTGCAAGAGTCACCAAAAGATTCACTCGGGAATGGACAATCGACAGTATCCGTGCGTGATCTGTAACAAAATGTTCGTCAGTAAGAGTTATCTGAATACCCACCTGCGTATACATACCGGTGAGAAACCATATTTGTGCGAAGTGTGCGGTAAAGGATTTCTGACGAGAGTAGATCTGAAGATACACTCGACGATGCATACTGGCGAGAAGAGCTTCAAGTGCGAGATGTGCGGAAAGGTGTTCGCTAGACGAGCTGCGCTGAGATGTCACCGAAGATCACACACCGGCGAAAGACCGTATCGGTGCGACGTATGCGGGAAAACGTTCACGCAGTTCAGTCCGATGGCGATTCATAAGAGACTGCATACGGGCGAGAGACCGTACGAGTGTGATGTTTGCGACAAAGCGTTCGTCTCGAAGTCAACCATGATGTGCCACCGAAAGAAGCATCATCTGTCCACAACGCACTTACAGAAGGAGGTTCTGATGCCTCGCGAAAATAACGAGGGAAAGGCCATCATCTCGACTGAGATTGTCCTGAGGGAGTCGCATGAAGGGGTACAAATTACGGCTGATTAA
- Protein Sequence
- MAVVEEFDYLCRLCATKTGILMGLPIFEAGDKMRNIDKKIAACLPVQVSITDQLPKVVCEECAYKLDQLFDFRETCLHTEGMFMEMLKEICKEEVVHISEHDLGEVGEMSISRIQRNIDRIQNNIEDVQSHANVSSHETAEPTIHTMQVMDEMDLAGGEQVVTQEEIGQQDPDIEVTDIDCLDGETVRMVDEHIREVSNHQIAMHLEGDMTVVGNLTVSGHLSQLGINYVTSINPDDQNREQIVHYCENVKYEPVPIKQEYQRLQERLTNEEATHVLENNVTPEGFAQSHPETESEIEESVISESERGNISTTHSNVLPSTSQVTAENSEIMVEYTKRAKHTLLESILNNPTVDETGSHWYVCPFCNEAALETNNLAAHFEQHFCGCQCGLYFTSVEVLNMHKQQCDVLKTKVVMKEKKTVEAELPTTQNNIETTNDQKKQPTVRQKWTPKVCTQCGKQYRTNYKLQEHMRKHTGEKPFQCSTCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCNTCGQNFKTKQSLLDHQNRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVICNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEMCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCDKAFVSKSTMMCHRKKHHLSTTHLQKEVLMPRENNEGKAIISTEIVLRESHEGVQITAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761134;
- 90% Identity
- iTF_01255880;
- 80% Identity
- -